Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq860 100 3e-16 seq551 86.0 6e-12 >seq860 Length=330425 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||||||||||||||| || |||||| || ||||||||| Sbjct 178942 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATTG 179001 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || ||||| ||||| | ||||||| | |||||||| || ||| ||||| Sbjct 179002 CTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTC 179051 >seq551 Length=8489217 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| ||||| || | | ||||| || || |||||||||||| || ||| || Sbjct 2123530 CAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCG 2123589 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| ||||| || || | | |||| || | ||| || || ||||| |||||||| Sbjct 2123590 CCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTC 2123649 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || |||| | || | || || | ||||| || || | || Sbjct 2123650 CTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGT 2123709 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 2123710 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2123749 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| ||| |||||| ||||| || || | | Sbjct 2123327 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 2123386 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||| || || || || |||| Sbjct 2123387 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 2123446 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| || || Sbjct 2123447 TTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 2123506 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 2123507 ACAAAGATCTGCATG 2123521 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| ||| |||||| ||||| || || | | Sbjct 2123783 GACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCAGCA 2123842 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||| || || || || |||| Sbjct 2123843 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 2123902 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || || |||||||| || || Sbjct 2123903 TTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 2123962 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 2123963 ACAAAGATCTGCATG 2123977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570002919400