Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq586 100 9e-18 seq574 98.7 3e-17 seq1713 86.0 2e-13 >seq586 Length=297847 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 271089 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 271148 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 271149 CCCGGGTTTCGGC 271161 >seq574 Length=2205963 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 744168 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 744109 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 744108 CCGGGTTTCGGC 744097 >seq1713 Length=1064733 Score = 86.0 bits (94), Expect = 2e-13 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA- 2826 |||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||| || Sbjct 630 GGCTGAAGCAGCTCAGCTGGGAGAGTGTTAGACTGAAGATATAAAGGTCCCTGGTTGAAG 571 Query 2827 CCCCGGGCT 2835 ||| ||||| Sbjct 570 CCCTGGGCT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848401250175