Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 129 8e-25
seq860 123 3e-23
seq1573 120 4e-22
>seq1728
Length=2076782
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| |
Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| |
Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423
Query 39759 CAACAAGTCTCTCTCC 39774
|||| | ||||| ||
Sbjct 1517422 CAACCACCCTCTCACC 1517407
Score = 86.0 bits (94), Expect = 9e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | |||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 1514973 ATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 1514914
Query 39854 AAGAGATAAT 39863
|| | | |||
Sbjct 1514913 AATAAAAAAT 1514904
>seq860
Length=330425
Score = 123 bits (136), Expect = 3e-23
Identities = 128/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| |||| ||| || ||||| ||||| ||||| || | || ||||| ||||| || |
Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||||||||| |||| ||||| ||| || || |||| ||||| | |||||| |
Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | ||||| || || | |||||||| ||||| || |||||||
Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCATGG 187514
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383
||| |||||||| || || || ||||||||||| |||| || |||||||| |||||
Sbjct 178950 TATTTCTGTACACAGGTTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATTGCTCTTCCG 179009
Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443
||| |||| ||| ||||| || || | || || ||||| || ||||||||||||| ||
Sbjct 179010 GTTGCAGGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTCTGTCTGAGATTCGATGAT 179069
Query 69444 AG 69445
||
Sbjct 179070 AG 179071
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||||| || || || | ||||| || ||||| || |||||||| || || || | |||
Sbjct 174974 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 175033
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822
|||||||| ||||| || |||||||| || ||||||||||| ||
Sbjct 175034 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGG 175077
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || |||| ||||| || || |||||| || | || || || || || || |
Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | |
Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| |||| || ||||| | |||||| | | || || | |||||| ||||
Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006
|| || | |||||||||||| ||||||| || | || |||||||| || || || ||
Sbjct 176499 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 176558
Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066
||||| |||||||| || || ||||| | || || | | || || || |||| ||
Sbjct 176559 GCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCA 176618
Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126
|| || || | | || || |||||||||| || || || ||||| || || ||
Sbjct 176619 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGA 176678
Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152
| ||| | | || || | ||||||
Sbjct 176679 CGATGGCGTCTGTTGGAGCGTTCAGC 176704
>seq1573
Length=591436
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| |||||||| |||||||||||||||| || | || |
Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | ||||| || |||||||||||||| ||||| ||||||||||| |
Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539
Query 39759 CAAC 39762
| ||
Sbjct 537540 CTAC 537543
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| |||||||| | || |||||||| || || ||||| || || || || |||||
Sbjct 536123 TGACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCC 536182
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||| || || ||||||||||| ||||| |||||
Sbjct 536183 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686849425320600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |