Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1728 129 8e-25 seq860 123 3e-23 seq1573 120 4e-22 >seq1728 Length=2076782 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 1517542 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 1517483 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| | Sbjct 1517482 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGG 1517423 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | ||||| || Sbjct 1517422 CAACCACCCTCTCACC 1517407 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| | |||||||| || |||||||| ||||||||||||||||| ||||||||| Sbjct 1514973 ATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 1514914 Query 39854 AAGAGATAAT 39863 || | | ||| Sbjct 1514913 AATAAAAAAT 1514904 >seq860 Length=330425 Score = 123 bits (136), Expect = 3e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| ||||| ||||| || | || ||||| ||||| || | Sbjct 187347 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGA 187406 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| |||| ||||| ||| || || |||| ||||| | |||||| | Sbjct 187407 TAGCATAGTCAGGGTGTTTGGTAGTCAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCA 187466 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | ||||| || || | |||||||| ||||| || ||||||| Sbjct 187467 GTTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCATGG 187514 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 69324 TATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTT 69383 ||| |||||||| || || || ||||||||||| |||| || |||||||| ||||| Sbjct 178950 TATTTCTGTACACAGGTTGCTGCATTTGATAGTTCCCAAGTTCTGCTGATTGCTCTTCCG 179009 Query 69384 GTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 ||| |||| ||| ||||| || || | || || ||||| || ||||||||||||| || Sbjct 179010 GTTGCAGGAGTCTTTGTACAGCATGTAAGGGGTGCCAGTCTCTGTCTGAGATTCGATGAT 179069 Query 69444 AG 69445 || Sbjct 179070 AG 179071 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 174974 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 175033 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| ||||| || |||||||| || ||||||||||| || Sbjct 175034 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGG 175077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || |||| ||||| || || |||||| || | || || || || || || | Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | | Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| || ||||| | |||||| | | || || | |||||| |||| Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| ||||||| || | || |||||||| || || || || Sbjct 176499 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAA 176558 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||||| |||||||| || || ||||| | || || | | || || || |||| || Sbjct 176559 GCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTCA 176618 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | | || || |||||||||| || || || ||||| || || || Sbjct 176619 AAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGGA 176678 Query 69127 CTATGTCTCTTATTTGAACTTTCAGC 69152 | ||| | | || || | |||||| Sbjct 176679 CGATGGCGTCTGTTGGAGCGTTCAGC 176704 >seq1573 Length=591436 Score = 120 bits (132), Expect = 4e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| |||||||| |||||||||||||||| || | || | Sbjct 537420 CCTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 537479 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | ||||| || |||||||||||||| ||||| ||||||||||| | Sbjct 537480 TCAGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 537539 Query 39759 CAAC 39762 | || Sbjct 537540 CTAC 537543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| | || |||||||| || || ||||| || || || || ||||| Sbjct 536123 TGACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCC 536182 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||| || || ||||||||||| ||||| ||||| Sbjct 536183 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686849425320600