Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq562 104 2e-17
seq1573 96.9 3e-15
seq1728 86.0 5e-12
>seq562
Length=6874971
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| ||||| || || ||| | |||||||| |||||| ||||||||| | |
Sbjct 2708741 TGATGGCTTTGCCTCCATGCCATGCTCTTTGTCAGTTCTACGTTCTAAATGGTGAATTAT 2708800
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || ||| | || || || || || || ||||||||||| || || || || || || |
Sbjct 2708801 CTTGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCCTTCAATATTGCCA 2708860
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203
| ||| | |||||||| || |||||||| || || ||
Sbjct 2708861 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 2708897
>seq1573
Length=591436
Score = 96.9 bits (106), Expect = 3e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999
||||| ||||| || || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 539699 TGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCGGAAATGTACAGTCTTCTT 539640
Query 44000 ATAGATACGTACATCAAAGAT 44020
|| || || ||||| ||||||
Sbjct 539639 ATTGACACATACATTAAAGAT 539619
>seq1728
Length=2076782
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/108 (80%), Gaps = 3/108 (3%)
Strand=Plus/Plus
Query 44366 GAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT-GAACTTTTGATGAA 44424
|||||| | ||| || ||||||||| | |||| ||||||||| | ||||| ||||||
Sbjct 1521351 GAATTTCTAACAGAGGCGTTACCTGTAGGTCTAATTGGAATGAATTGCACTTT-GATGAA 1521409
Query 44425 CCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC-TGGGTT 44471
||||||||||||| ||||||| || |||||| |||| | ||||||
Sbjct 1521410 ACAATATATTGAATTTGTTGCAGACCGGTTACTTATGGAGCTTGGGTT 1521457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397422503774575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |