Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq562 104 2e-17 seq1573 96.9 3e-15 seq1728 86.0 5e-12 >seq562 Length=6874971 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | |||||||| |||||| ||||||||| | | Sbjct 2708741 TGATGGCTTTGCCTCCATGCCATGCTCTTTGTCAGTTCTACGTTCTAAATGGTGAATTAT 2708800 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | || || || || || || ||||||||||| || || || || || || | Sbjct 2708801 CTTGCCAACTCTACCAGAGGTCTGGAGATATGGGACTAGGAGTGCCCTTCAATATTGCCA 2708860 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 2708861 GCTATTCGCTGCTCACATACATGATTGCCCATGTCAC 2708897 >seq1573 Length=591436 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||||| ||||| || || |||||||| |||||||| ||||||||||||||||||||||| Sbjct 539699 TGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCGGAAATGTACAGTCTTCTT 539640 Query 44000 ATAGATACGTACATCAAAGAT 44020 || || || ||||| |||||| Sbjct 539639 ATTGACACATACATTAAAGAT 539619 >seq1728 Length=2076782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 44366 GAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT-GAACTTTTGATGAA 44424 |||||| | ||| || ||||||||| | |||| ||||||||| | ||||| |||||| Sbjct 1521351 GAATTTCTAACAGAGGCGTTACCTGTAGGTCTAATTGGAATGAATTGCACTTT-GATGAA 1521409 Query 44425 CCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAAC-TGGGTT 44471 ||||||||||||| ||||||| || |||||| |||| | |||||| Sbjct 1521410 ACAATATATTGAATTTGTTGCAGACCGGTTACTTATGGAGCTTGGGTT 1521457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397422503774575