Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq551 98.7 8e-16 >seq551 Length=8489217 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || |||| ||||| || | || || || || || || ||||||||| Sbjct 2123520 TGCCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 2123579 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | ||||| | ||||| ||||| || || || | || || | ||| || || || | Sbjct 2123580 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 2123639 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | | || | ||||| ||| |||| Sbjct 2123640 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 2123699 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 2123700 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | ||||| | ||||| ||||| || || Sbjct 2123324 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2123383 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | || || || || ||||||| ||| Sbjct 2123384 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2123443 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || || || | ||||| ||||| || Sbjct 2123444 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2123503 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2123504 TTCACAAAGATCTGCAT 2123520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | ||||| | ||||| ||||| || || Sbjct 2123780 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCTTCCAGCTGCTTGCCA 2123839 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | || || || || ||||||| ||| Sbjct 2123840 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2123899 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || || || | ||||| ||||| || Sbjct 2123900 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 2123959 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 2123960 TTCACAAAGATCTGCAT 2123976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424898587989480