Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq562 102 6e-17 >seq562 Length=6874971 Score = 102 bits (112), Expect = 6e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||||||||| || || || ||||| || || ||||| Sbjct 2708900 CCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAGGGCACT 2708841 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||| ||||||||||| || || || || || || || |||| || | | | || Sbjct 2708840 CCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGATAATTCACCATTTAGAACG 2708781 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || |||||||| |||| || |||||||| |||||| Sbjct 2708780 TAGAACTGACAAAGAGCATGGCATGGAGGCAAAGCCATC 2708742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391912568172145