Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1682 246 4e-60 seq1434 127 3e-24 >seq1682 Length=19375980 Score = 246 bits (272), Expect = 4e-60 Identities = 557/831 (67%), Gaps = 16/831 (2%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| ||| |||| |||||| |||||||||||||| || || |||||| |||| Sbjct 16300666 CCGCTGAGCCAGGAGGAGGCCGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 16300725 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||| | |||||| || ||||||| ||||| |||||||||||||||||| Sbjct 16300726 ATCGAGATGTTCGAGAGGCTCCTGCGGTCCATCTATGCCCCCCAGAACCTCTACTGCGTC 16300785 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCATCGCCAGGT 13848 ||| ||||| ||||||| | | ||| | || ||| || |||||||| | Sbjct 16300786 CACATGGACAGCAAGTCCCCAGCCTCCTTC--CAGGAGGCTGTGCGAGCCATCGCTGCCT 16300843 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| ||||| ||||| ||| ||| | ||||||| |||| ||||||| | Sbjct 16300844 GCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTACGCCTCCTGGTCCC 16300903 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | ||||||| || || | ||| ||| ||||||| | || || ||| | | Sbjct 16300904 GGCTGCAGGCTGATCTGAACTGTATGCAGGACCTGCTCCAGAGTCCGGTGCCCTGGCGCT 16300963 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 |||| |||||| ||||| | |||||||| | ||||||||| |||||||| || Sbjct 16300964 ACCTCCTCAACACTTGCGGCACCGACTTCCCCATTAAGACCAACGCCGAGATCGTCCGCA 16301023 Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGA--GAGCGAGGGCATGCCCAACCACAA 14086 | ||||||| ||| || |||| | | || | |||| | | | || ||| Sbjct 16301024 CCCTGAAGGTGCTGCAGGGGCGGAACAGCATCGAATCGGAGAGGCCCT--CAGCCCTCAA 16301081 Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGC-CAGCGGCGGCGTGGTGGTCAACACCG 14145 || | | || || | ||| ||| | ||| | | || || Sbjct 16301082 GCAGGAGCGGTGGCGGTACCACCACAAAGTGACACAG-------TTCATCTTCCGGACGA 16301134 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 || | | || | |||||||| | | | |||||| || |||| ||||| ||| | | Sbjct 16301135 CCACGCAGAAAGAGCCGCCGCCACACGGCTCCCCCATGTTCACGGGCAACGCGTACATCG 16301194 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 || ||| |||| || ||||| |||| || || | ||||| | | || | Sbjct 16301195 TGGCCACGCGGGCCTTTGTGGAGCACGTCTTCCAGAGCCCCACGGTGCAGCAGTTCCTCG 16301254 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | ||||||| |||||||||||||||||| | ||||||||| | | | ||| Sbjct 16301255 AGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC 16301314 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| ||| |||| | || ||| ||||| ||| |||||||||| |||| Sbjct 16301315 CCGGTGTGCCGGGGGCTGTGCCGCACAACGACAAGTTCGAGCTCTCGGACATGAACGCCA 16301374 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 || | | | ||||||||||| ||| ||||| || | || || || || | |||| Sbjct 16301375 TGGCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACC 16301434 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496 | || ||| ||| | ||| | |||| ||||| ||| ||| |||||| Sbjct 16301435 CACCCTGCACTGGCCTGCACCAGCGCGCCGTCTGCGTCTACGGCGCCGGCG 16301485 >seq1434 Length=7059826 Score = 127 bits (140), Expect = 3e-24 Identities = 260/382 (68%), Gaps = 16/382 (4%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGAT 13738 ||| |||| || || ||| |||||||| ||| ||| || |||||| | |||| Sbjct 2118167 GGAGGAGGCCGCCTTCCCCGTCGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGAC 2118111 Query 13739 GTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGA 13798 |||||||| ||| | ||||| | ||| || || ||| ||||||||||||||||||| Sbjct 2118110 CTTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGCGTCCACGTGGA 2118051 Query 13799 CTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCT 13856 | ||| | |||| || || | | || || | | | | | |||||||| Sbjct 2118050 CCAGAAGGCGCCGGC--CGCCTTTAAGCAGGCGGTGCAGCGCCTGGTGGGCTGCTTCCCC 2117993 Query 13857 AACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT---CGCGTG 13913 |||| ||| ||| | || || | ||||| |||||| ||| ||| || Sbjct 2117992 AACGCTTTCCTCGCCTCCAGGATGGAGCGGGTGGTCTACGGCG---GGATATCCCGCCTG 2117936 Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973 | ||||||||||| |||||| |||||| ||||| |||| |||| ||||||| Sbjct 2117935 CGGGCCGACCTCAATTGCATGAGAGACCTGCTGGCCTCTGCCGTGCCCTGGAAGTACCTG 2117876 Query 13974 CTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033 |||||| |||||| ||||||||| | |||||||||| ||| ||| | ||| || Sbjct 2117875 CTCAACACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAAATCATCCGGCTCCTC 2117816 Query 14034 AAGGCCCTGGGCGGCAAGAACG 14055 |||||| | | ||||| |||| Sbjct 2117815 AAGGCCTTCAGAGGCAAAAACG 2117794 Score = 107 bits (118), Expect = 3e-18 Identities = 281/417 (67%), Gaps = 25/417 (6%) Strand=Plus/Minus Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 ||| ||| ||||||||||| ||||||| |||||| ||||| |||| |||| | Sbjct 2106447 CGCCTGCGGGCCGACCTCAACTGCATGAGAGACCTGCTGGCCTCTGCCGTGCCCTGGAAG 2106388 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 |||||||||||| |||||| ||||||||| | |||||||||| ||| ||| | ||| Sbjct 2106387 TACCTGCTCAACACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAAATCATCCGG 2106328 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACG----CCCTGGAGAGCGAGGGCATGCCCA-ACC 14082 || |||||| | | ||||| |||| ||| || | || || ||||| | | Sbjct 2106327 CTCCTCAAGGCCTTCAGAGGCAAAAACGTCACCCCCGGCGTGCTGCCGCCGGCCCACATC 2106268 Query 14083 ACAAGCTGCACCGCATCAG-GAAGAGGCACGTGGTGGCCAG--CGGCGGCGTGG---TGG 14136 || ||||| | | | | ||| | |||| | |||| | || | ||| ||| Sbjct 2106267 ACCGCGCGCACCCAGTTTGTGCACAGGGA-GTGG-GCCCAGCACAACGCCTTGGGCATGG 2106210 Query 14137 TCAACACCGGCAG--GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194 ||| | || ||| | ||||||| || || || | || | |||||| || Sbjct 2106209 TCACCCCC--CAGGTGCACAAGGCACCCCCACCTCACAACCTTACCATCTACTTTGGCTC 2106152 Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGA----CGAGCCGG 14250 || ||| | || ||||||||| || ||||| || || ||| ||| || ||| | Sbjct 2106151 GGCATACGTGGCCGTCACCCGGCCCTTTGTGGAGTTTGTGCTCCGGGACCGCCGCGCCCG 2106092 Query 14251 TGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 | | ||||| || ||||| ||||||||| |||||||| || |||||| | |||| Sbjct 2106091 T-GACCTGC---TGGCCTGGTCCGAGGACACCTACAGCCCTGATGAGCACTTCTGGG 2106039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658682260230400