Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq1682 246 4e-60
seq1434 127 3e-24
>seq1682
Length=19375980
Score = 246 bits (272), Expect = 4e-60
Identities = 557/831 (67%), Gaps = 16/831 (2%)
Strand=Plus/Plus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
|| ||||||| ||| |||| |||||| |||||||||||||| || || |||||| ||||
Sbjct 16300666 CCGCTGAGCCAGGAGGAGGCCGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 16300725
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
||||||||||||||| | |||||| || ||||||| ||||| ||||||||||||||||||
Sbjct 16300726 ATCGAGATGTTCGAGAGGCTCCTGCGGTCCATCTATGCCCCCCAGAACCTCTACTGCGTC 16300785
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGCCATCGCCAGGT 13848
||| ||||| ||||||| | | ||| | || ||| || |||||||| |
Sbjct 16300786 CACATGGACAGCAAGTCCCCAGCCTCCTTC--CAGGAGGCTGTGCGAGCCATCGCTGCCT 16300843
Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908
||||||| ||||| ||||| ||| ||| | ||||||| |||| ||||||| |
Sbjct 16300844 GCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTACGCCTCCTGGTCCC 16300903
Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968
| ||||||| || || | ||| ||| ||||||| | || || ||| | |
Sbjct 16300904 GGCTGCAGGCTGATCTGAACTGTATGCAGGACCTGCTCCAGAGTCCGGTGCCCTGGCGCT 16300963
Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028
|||| |||||| ||||| | |||||||| | ||||||||| |||||||| ||
Sbjct 16300964 ACCTCCTCAACACTTGCGGCACCGACTTCCCCATTAAGACCAACGCCGAGATCGTCCGCA 16301023
Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGA--GAGCGAGGGCATGCCCAACCACAA 14086
| ||||||| ||| || |||| | | || | |||| | | | || |||
Sbjct 16301024 CCCTGAAGGTGCTGCAGGGGCGGAACAGCATCGAATCGGAGAGGCCCT--CAGCCCTCAA 16301081
Query 14087 GCTGCACCGCATCAGGAAGAGGCACGTGGTGGC-CAGCGGCGGCGTGGTGGTCAACACCG 14145
|| | | || || | ||| ||| | ||| | | || ||
Sbjct 16301082 GCAGGAGCGGTGGCGGTACCACCACAAAGTGACACAG-------TTCATCTTCCGGACGA 16301134
Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205
|| | | || | |||||||| | | | |||||| || |||| ||||| ||| | |
Sbjct 16301135 CCACGCAGAAAGAGCCGCCGCCACACGGCTCCCCCATGTTCACGGGCAACGCGTACATCG 16301194
Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265
|| ||| |||| || ||||| |||| || || | ||||| | | || |
Sbjct 16301195 TGGCCACGCGGGCCTTTGTGGAGCACGTCTTCCAGAGCCCCACGGTGCAGCAGTTCCTCG 16301254
Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325
| ||| | ||||||| |||||||||||||||||| | ||||||||| | | | |||
Sbjct 16301255 AGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC 16301314
Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385
||| ||| |||| | || ||| ||||| ||| |||||||||| ||||
Sbjct 16301315 CCGGTGTGCCGGGGGCTGTGCCGCACAACGACAAGTTCGAGCTCTCGGACATGAACGCCA 16301374
Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445
|| | | | ||||||||||| ||| ||||| || | || || || || | ||||
Sbjct 16301375 TGGCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACC 16301434
Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496
| || ||| ||| | ||| | |||| ||||| ||| ||| ||||||
Sbjct 16301435 CACCCTGCACTGGCCTGCACCAGCGCGCCGTCTGCGTCTACGGCGCCGGCG 16301485
>seq1434
Length=7059826
Score = 127 bits (140), Expect = 3e-24
Identities = 260/382 (68%), Gaps = 16/382 (4%)
Strand=Plus/Minus
Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGAT 13738
||| |||| || || ||| |||||||| ||| ||| || |||||| | ||||
Sbjct 2118167 GGAGGAGGCCGCCTTCCCCGTCGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGAC 2118111
Query 13739 GTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGA 13798
|||||||| ||| | ||||| | ||| || || ||| |||||||||||||||||||
Sbjct 2118110 CTTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACGTCTACTGCGTCCACGTGGA 2118051
Query 13799 CTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCT 13856
| ||| | |||| || || | | || || | | | | | ||||||||
Sbjct 2118050 CCAGAAGGCGCCGGC--CGCCTTTAAGCAGGCGGTGCAGCGCCTGGTGGGCTGCTTCCCC 2117993
Query 13857 AACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT---CGCGTG 13913
|||| ||| ||| | || || | ||||| |||||| ||| ||| ||
Sbjct 2117992 AACGCTTTCCTCGCCTCCAGGATGGAGCGGGTGGTCTACGGCG---GGATATCCCGCCTG 2117936
Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973
| ||||||||||| |||||| |||||| ||||| |||| |||| |||||||
Sbjct 2117935 CGGGCCGACCTCAATTGCATGAGAGACCTGCTGGCCTCTGCCGTGCCCTGGAAGTACCTG 2117876
Query 13974 CTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033
|||||| |||||| ||||||||| | |||||||||| ||| ||| | ||| ||
Sbjct 2117875 CTCAACACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAAATCATCCGGCTCCTC 2117816
Query 14034 AAGGCCCTGGGCGGCAAGAACG 14055
|||||| | | ||||| ||||
Sbjct 2117815 AAGGCCTTCAGAGGCAAAAACG 2117794
Score = 107 bits (118), Expect = 3e-18
Identities = 281/417 (67%), Gaps = 25/417 (6%)
Strand=Plus/Minus
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
||| ||| ||||||||||| ||||||| |||||| ||||| |||| |||| |
Sbjct 2106447 CGCCTGCGGGCCGACCTCAACTGCATGAGAGACCTGCTGGCCTCTGCCGTGCCCTGGAAG 2106388
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
|||||||||||| |||||| ||||||||| | |||||||||| ||| ||| | |||
Sbjct 2106387 TACCTGCTCAACACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGGGAAATCATCCGG 2106328
Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACG----CCCTGGAGAGCGAGGGCATGCCCA-ACC 14082
|| |||||| | | ||||| |||| ||| || | || || ||||| | |
Sbjct 2106327 CTCCTCAAGGCCTTCAGAGGCAAAAACGTCACCCCCGGCGTGCTGCCGCCGGCCCACATC 2106268
Query 14083 ACAAGCTGCACCGCATCAG-GAAGAGGCACGTGGTGGCCAG--CGGCGGCGTGG---TGG 14136
|| ||||| | | | | ||| | |||| | |||| | || | ||| |||
Sbjct 2106267 ACCGCGCGCACCCAGTTTGTGCACAGGGA-GTGG-GCCCAGCACAACGCCTTGGGCATGG 2106210
Query 14137 TCAACACCGGCAG--GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194
||| | || ||| | ||||||| || || || | || | |||||| ||
Sbjct 2106209 TCACCCCC--CAGGTGCACAAGGCACCCCCACCTCACAACCTTACCATCTACTTTGGCTC 2106152
Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGA----CGAGCCGG 14250
|| ||| | || ||||||||| || ||||| || || ||| ||| || ||| |
Sbjct 2106151 GGCATACGTGGCCGTCACCCGGCCCTTTGTGGAGTTTGTGCTCCGGGACCGCCGCGCCCG 2106092
Query 14251 TGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307
| | ||||| || ||||| ||||||||| |||||||| || |||||| | ||||
Sbjct 2106091 T-GACCTGC---TGGCCTGGTCCGAGGACACCTACAGCCCTGATGAGCACTTCTGGG 2106039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658682260230400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |