Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq562 118 9e-22
>seq562
Length=6874971
Score = 118 bits (130), Expect = 9e-22
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000
|||||| ||||| || || |||||||| ||||| || || |||||||| || || |||||
Sbjct 2708904 TAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAGGG 2708845
Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060
|| || || ||||| || || |||||||||||||| || || || | || || |
Sbjct 2708844 CACTCCTAGTCCCATATCTCCAGACCTCTGGTAGAGTTGGCAAGATAATTCACCATTTAG 2708785
Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
||||| |||||||| | || ||||| ||||| | |||||| ||
Sbjct 2708784 AACGTAGAACTGACAAAGAGCATGGCATGGAGGCAAAGCCATCAG 2708740
Score = 105 bits (116), Expect = 5e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| ||||| || || |||||||||||||| || || | ||||||| ||
Sbjct 2705265 CATATCTTTGTATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAATAGGTCCCAAATC 2705206
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|||||||| || | ||| ||| ||| |||| || || | || || ||||| ||
Sbjct 2705205 CCCCTCTTCTCTTTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATC 2705146
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| ||||| || ||||| ||||||| ||||||| ||||| || ||
Sbjct 2705145 CCAAATCTTCACGCCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC 2705098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406276157556180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |