Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq562 82.4 7e-11 >seq562 Length=6874971 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| || | ||||| || || || | Sbjct 2705111 CCAAAGAACTCTCTGCAAAGGGCGTGAAGATTTGGGATGCCAATGGGTCACGTGAGTTCC 2705170 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | || ||||| || ||||| || | || || |||| Sbjct 2705171 TGGATAAGCAGGGTTTCTGCAAAAGAGAAGAGGGGGATTTGGGACCTATTTATGGTTTCC 2705230 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||||||||| || || Sbjct 2705231 AGTGGAGGCACTTTGGGGCAGAATA 2705255 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || ||||||||||| ||||||||||| || || | || ||||| || ||||| || Sbjct 2705255 TATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAATAGGTCCCAAATCCCCCTCTTCT 2705196 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | ||| ||| |||| ||||| || || || ||||| | || ||||| |||||| Sbjct 2705195 CTTTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAATCTTC 2705136 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| | ||||| || |||| Sbjct 2705135 ACGCCCTTTGCAGAGAGTTCTTTGG 2705111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448223653318800