Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1573 120 3e-22
seq1728 107 2e-18
>seq1573
Length=591436
Score = 120 bits (132), Expect = 3e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| |||||||| || ||||| |||||||| || | ||| |||||||| ||||| || ||
Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||| || | |||||||| ||||||||||| || ||||| || || ||||| |||
Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 537541
Query 4692 ACTA 4695
||||
Sbjct 537542 ACTA 537545
>seq1728
Length=2076782
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || || || || | ||| ||||| | |||||||| ||
Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
|||||||||||||| ||||| || || |||||||| || ||||| || || ||||| ||
Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGCA 1517421
Query 4692 AC 4693
||
Sbjct 1517420 AC 1517419
Score = 105 bits (116), Expect = 6e-18
Identities = 102/130 (78%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
||| |||||| || | |||||| ||||| || || ||||||||||||||||| |||| ||
Sbjct 1512682 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCCAGAA 1512623
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||||| |||||||| | ||| || | || || || |||||||| |||| || || |
Sbjct 1512622 CATGAGAGATAAAGTATTTTTCATCTGCTTTTAGCTTGTTCCAGTGCGGCAGGTCCTTTG 1512563
Query 5041 TTAAATCAAC 5050
|| |||||
Sbjct 1512562 ACAAGTCAAC 1512553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427013609727695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |