Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1573 102 1e-16
seq860 102 1e-16
seq1728 84.2 3e-11
>seq1573
Length=591436
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||| |||||||| ||||| || ||||||| ||| | ||| ||
Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
|||||||| |||| || || || ||||||||||| || ||||| || || ||||| ||
Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 537540
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
||||| |||||||| | ||||||||||| ||||| ||||| || || || || ||||||
Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929
|||| || || |||||||| || ||||| |||||
Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218
>seq860
Length=330425
Score = 102 bits (112), Expect = 1e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061
|||||| ||||| ||||||||||| ||||| || |||| || || |||| || || ||
Sbjct 180368 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 180427
Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120
||||| || || |||||||| |||||| || ||||| || | ||| || |||||||||
Sbjct 180428 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATG 180486
Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150
| || || || || || | | |||||||
Sbjct 180487 GCTCAAGGTAGATGGCGAAGGCCCCAGGTC 180516
Score = 96.9 bits (106), Expect = 5e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||| ||||| || | ||||| || ||||| || |||||||| || || || | |||
Sbjct 174974 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 175033
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| || ||||||||||||||||||||||| || | | | | ||
Sbjct 175034 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGGAGAAAGGAGAAGGCTG 175093
Query 77247 TTTCTGAGACCAT 77259
||||||| |||||
Sbjct 175094 TTTCTGACACCAT 175106
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| ||||| || || | || || || ||||| |||||||| ||||||| || ||||||
Sbjct 182693 GTGCCTGCGTTGAACAGCGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 182752
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|| |||||||| || | || ||||| || || ||||| || | ||| | |||||||
Sbjct 182753 TAAGTTTCAATGGCAGCATCAATGTCGTTTTTGTGGATTCCCACTGATACCCTCATCAAC 182812
Query 78519 ATATGCTGAGGTCTTTCA 78536
||||| || || | ||||
Sbjct 182813 ATATGTTGGGGACGTTCA 182830
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || |||| |||||||| || |||||| || | || || || || || || |
Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
| | ||||| || ||||| |||||||||||||| || || ||||| || | || || |
Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| || ||||| | || || | | ||| || | |||||| ||||
Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755
Score = 86.0 bits (94), Expect = 9e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|| || | |||||||||||| ||||||| || || || |||||||| || ||||||||
Sbjct 176499 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTT-GGCAAGTTCACAGCTGGCTTCCAA 176557
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
|| || |||||||| || || ||||| | || || | | || || ||| ||| ||
Sbjct 176558 AGCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTC 176617
Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533
||| || || | | || || |||||||| | || || || ||||| ||||| ||
Sbjct 176618 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGG 176677
Query 77534 TCTATG 77539
| |||
Sbjct 176678 ACGATG 176683
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763
||||||||| | ||| ||| | | ||| || ||||| || || || ||||||||||
Sbjct 178922 CTACCTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATAG 178981
Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823
| |||| || || || |||||||| ||||| ||||| || || || || | || |
Sbjct 178982 TTCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTAAGGGG 179041
Query 77824 TCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862
| || || || |||| |||||||| |||| | |||||
Sbjct 179042 TGCCAGTCTCTGTCTGAGATTCGATGATAGCATACCAGA 179080
>seq1728
Length=2076782
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || || || || || || ||||| || || | || ||
Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||||||||| || || || || || |||||||| || ||||| || || ||||| ||
Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGC 1517422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694608754565600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |