Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1573 102 1e-16 seq860 102 1e-16 seq1728 84.2 3e-11 >seq1573 Length=591436 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || || || ||||||||||| || ||||| || || ||||| || Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 537540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| ||||| ||||| || || || || |||||| Sbjct 536124 GACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCT 536183 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || |||||||| || ||||| ||||| Sbjct 536184 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218 >seq860 Length=330425 Score = 102 bits (112), Expect = 1e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 180368 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 180427 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| || || |||||||| |||||| || ||||| || | ||| || ||||||||| Sbjct 180428 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATG 180486 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | ||||||| Sbjct 180487 GCTCAAGGTAGATGGCGAAGGCCCCAGGTC 180516 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 174974 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 175033 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || ||||||||||||||||||||||| || | | | | || Sbjct 175034 TCATTATTGCCCAGGATCTGAGCAGTAGAAGCAGTTGGCATCGGAGAAAGGAGAAGGCTG 175093 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 175094 TTTCTGACACCAT 175106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || || | || || || ||||| |||||||| ||||||| || |||||| Sbjct 182693 GTGCCTGCGTTGAACAGCGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 182752 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || ||||| || | ||| | ||||||| Sbjct 182753 TAAGTTTCAATGGCAGCATCAATGTCGTTTTTGTGGATTCCCACTGATACCCTCATCAAC 182812 Query 78519 ATATGCTGAGGTCTTTCA 78536 ||||| || || | |||| Sbjct 182813 ATATGTTGGGGACGTTCA 182830 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||| |||||||| || |||||| || | || || || || || || | Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| || ||||| | || || | | ||| || | |||||| |||| Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755 Score = 86.0 bits (94), Expect = 9e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | |||||||||||| ||||||| || || || |||||||| || |||||||| Sbjct 176499 GAACCCTCATATGTTTCATACGGTCCTTGCTCCTT-GGCAAGTTCACAGCTGGCTTCCAA 176557 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || || |||||||| || || ||||| | || || | | || || ||| ||| || Sbjct 176558 AGCACCATAATAAATGGTCTCAAAAATTTGCTGGTTCAAGTGCTGGGCCTCAGGACTTTC 176617 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || || | | || || |||||||| | || || || ||||| ||||| || Sbjct 176618 AAAGGGGTACCTCATCAAGATGAAAGCATCTGCCAGGCCTTGCACACCAATGCCAATGGG 176677 Query 77534 TCTATG 77539 | ||| Sbjct 176678 ACGATG 176683 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||| | | ||| || ||||| || || || |||||||||| Sbjct 178922 CTACCTCATCGTTGCTGGTATACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATAG 178981 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | |||| || || || |||||||| ||||| ||||| || || || || | || | Sbjct 178982 TTCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAGGAGTCTTTGTACAGCATGTAAGGGG 179041 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 | || || || |||| |||||||| |||| | ||||| Sbjct 179042 TGCCAGTCTCTGTCTGAGATTCGATGATAGCATACCAGA 179080 >seq1728 Length=2076782 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| || ||||| || || ||||| || Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGC 1517422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694608754565600