Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1728 98.7 1e-15 seq860 96.9 5e-15 seq1573 95.1 2e-14 >seq1728 Length=2076782 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| || ||||| || || || || || Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGCA 1517421 Query 46774 ACAAGTCTCTCTCC 46787 || | ||||| || Sbjct 1517420 ACCACCCTCTCACC 1517407 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||||| | |||||||||| ||||| ||||| ||||||||||||||||| |||||||| Sbjct 1514974 AATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATT 1514915 Query 46866 AAAGAGAAA 46874 ||| | ||| Sbjct 1514914 AAATAAAAA 1514906 >seq860 Length=330425 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | ||| || || || ||||| || || || || Sbjct 187349 CTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGATA 187408 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 ||||||||||| |||| ||||| ||| || || || |||| || || | ||||| | Sbjct 187409 GCATAGTCAGGGTGTTTGGTAGT-CAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCAG 187467 Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | || || || || | |||||||| ||||| || ||||||| Sbjct 187468 TTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCATGG 187514 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || |||| |||||||| || |||||| || | || || || || || || | Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| || ||||| | || || | | ||| || | |||||| |||| Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| || ||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 180368 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 180427 Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 ||||| || || |||||||| |||||| || || || || | ||| || ||||||||| Sbjct 180428 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATG 180486 Query 76716 GTTCTAGATATATCGC 76731 | || || || || || Sbjct 180487 GCTCAAGGTAGATGGC 180502 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||| || |||| || || || ||||| || ||||| ||||||| || |||||| Sbjct 182693 GTGCCTGCGTTGAACAGCGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 182752 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || || ||||| || | || | ||||||| Sbjct 182753 TAAGTTTCAATGGCAGCATCAATGTCGTTTTTGTGGATTCCCACTGATACCCTCATCAAC 182812 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || || ||||| Sbjct 182813 ATATGTTGGGGACGTTC 182829 >seq1573 Length=591436 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || || || ||||||||||| || ||||| || || || || || Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 537541 Query 46774 AC 46775 || Sbjct 537542 AC 537543 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || |||||||||||||| ||||| || || || || ||||| Sbjct 536123 TGACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCC 536182 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| || ||||| ||||| Sbjct 536183 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712872775732800