Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1728 98.7 1e-15
seq860 96.9 5e-15
seq1573 95.1 2e-14
>seq1728
Length=2076782
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || || |||||||| || || | ||| ||
Sbjct 1517540 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 1517481
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| || ||||| || || || || ||
Sbjct 1517480 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATCCCTTCAACTGCAGCAAAGGCA 1517421
Query 46774 ACAAGTCTCTCTCC 46787
|| | ||||| ||
Sbjct 1517420 ACCACCCTCTCACC 1517407
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865
||||||| | |||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1514974 AATCCACTTCAGAGCCCAATCTGCCTTCTTCTTGACACAAGGCATTGTTTCAATAGCATT 1514915
Query 46866 AAAGAGAAA 46874
||| | |||
Sbjct 1514914 AAATAAAAA 1514906
>seq860
Length=330425
Score = 96.9 bits (106), Expect = 5e-15
Identities = 123/167 (74%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| |||| ||| || ||||| ||||| | ||| || || || ||||| || || || ||
Sbjct 187349 CTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATTCTCGCTGCCAGGATA 187408
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457
||||||||||| |||| ||||| ||| || || || |||| || || | ||||| |
Sbjct 187409 GCATAGTCAGGGTGTTTGGTAGT-CAGAGTCGCAGCCGTTTCAGCAGCCAGCGTATCCAG 187467
Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
||| | || || || || | |||||||| ||||| || |||||||
Sbjct 187468 TTCCACTGTTGTGACACCACTGTATAGCCCCTGAATTACCTTCATGG 187514
Score = 87.8 bits (96), Expect = 3e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || |||| |||||||| || |||||| || | || || || || || || |
Sbjct 172585 TCCACCCAAAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCCGCAATGTGGATGT 172644
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | ||||| || ||||| |||||||||||||| || || ||||| || | || || |
Sbjct 172645 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 172704
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| |||| || ||||| | || || | | ||| || | |||||| ||||
Sbjct 172705 TCTGAGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAAATCATCAGGAA 172755
Score = 86.0 bits (94), Expect = 9e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656
||| || ||||| ||||||||||| ||||| || |||| || || |||| || || |
Sbjct 180368 AACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 180427
Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715
||||| || || |||||||| |||||| || || || || | ||| || |||||||||
Sbjct 180428 CTCTTCTTTCCCAGTATTCTTCTTTAAG-TCAAGAAATTCAAAAATGTCCAAATGCCATG 180486
Query 76716 GTTCTAGATATATCGC 76731
| || || || || ||
Sbjct 180487 GCTCAAGGTAGATGGC 180502
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| ||||| || |||| || || || ||||| || ||||| ||||||| || ||||||
Sbjct 182693 GTGCCTGCGTTGAACAGCGTGGGTGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 182752
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| |||||||| | || || || || || || ||||| || | || | |||||||
Sbjct 182753 TAAGTTTCAATGGCAGCATCAATGTCGTTTTTGTGGATTCCCACTGATACCCTCATCAAC 182812
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || || |||||
Sbjct 182813 ATATGTTGGGGACGTTC 182829
>seq1573
Length=591436
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | ||| |||||||| ||||| |||||||||| ||| | || ||
Sbjct 537422 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 537481
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || || || ||||||||||| || ||||| || || || || ||
Sbjct 537482 AGCCAAAAAATTGATGCAAATGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 537541
Query 46774 AC 46775
||
Sbjct 537542 AC 537543
Score = 93.3 bits (102), Expect = 6e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382
|||||| |||||||| | || |||||||||||||| ||||| || || || || |||||
Sbjct 536123 TGACATGACTCCCATCCTCTGATATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCC 536182
Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
||||| || || |||||||| || ||||| |||||
Sbjct 536183 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 536218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712872775732800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |