Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq551 118 2e-21
seq1011 114 3e-20
>seq551
Length=8489217
Score = 118 bits (130), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || ||||| ||||| || ||||||||||| |||| || || | |||||||
Sbjct 2123765 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 2123824
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2123825 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2123884
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | | |||| ||| ||| || || || || ||
Sbjct 2123885 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2123941
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2123942 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123976
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || ||||| ||||| || ||||||||||| |||| | || | |||||||
Sbjct 2123309 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 2123368
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2123369 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2123428
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | | |||| ||| ||| || || || || ||
Sbjct 2123429 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2123485
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2123486 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520
Score = 107 bits (118), Expect = 4e-18
Identities = 152/211 (72%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || ||||||||||| |||| | || | ||||||||| |
Sbjct 2123542 CAAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 2123600
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || || ||||| |||||||||||||| | | || |||||||| || || |
Sbjct 2123601 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGA 2123660
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073
| || || || |||| | | |||| ||| ||| || || || || || || |
Sbjct 2123661 TCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCT 2123717
Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || |||||||| |||| ||||||
Sbjct 2123718 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748
Score = 104 bits (114), Expect = 5e-17
Identities = 149/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961
|| ||||| ||||| || ||||||||||| |||| | || | ||||||||| ||
Sbjct 2124002 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 2124061
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || ||||| |||||||||||||| | | || |||||||| || || || ||
Sbjct 2124062 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 2124121
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078
|| || |||| | | |||| ||| ||| || || || || || || || ||
Sbjct 2124122 GCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCT 2124178
Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| | |||||||| |||| |||||||||
Sbjct 2124179 GTCAAGGTCTTCACAAAGATCTGCATTTT 2124207
>seq1011
Length=3435084
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| || | | || | |||||||
Sbjct 2733949 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734008
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2734009 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734068
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2734069 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734125
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2734126 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| || | | || | |||||||
Sbjct 2734177 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734236
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2734237 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734296
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2734297 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734353
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2734354 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388
Score = 114 bits (126), Expect = 3e-20
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| || | | || | |||||||
Sbjct 2734405 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734464
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2734465 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734524
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2734525 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734581
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 2734582 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616
Score = 114 bits (126), Expect = 3e-20
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| || || || ||||| || ||||||||||| || | | || | |||||||
Sbjct 2734633 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734692
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 2734693 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734752
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| || || || || ||
Sbjct 2734753 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734809
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || |||||||| |||| |||||| ||
Sbjct 2734810 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2734847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153718573279965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |