Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq551 118 2e-21 seq1011 114 3e-20 >seq551 Length=8489217 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || ||||||||||| |||| || || | ||||||| Sbjct 2123765 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGCCCATCT 2123824 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2123825 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2123884 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 2123885 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2123941 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2123942 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123976 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || ||||||||||| |||| | || | ||||||| Sbjct 2123309 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 2123368 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2123369 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2123428 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 2123429 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2123485 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2123486 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123520 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| |||| | || | ||||||||| | Sbjct 2123542 CAAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 2123600 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| |||||||||||||| | | || |||||||| || || | Sbjct 2123601 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGA 2123660 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || || || |||| | | |||| ||| ||| || || || || || || | Sbjct 2123661 TCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCT 2123717 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| |||| |||||| Sbjct 2123718 TGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2123748 Score = 104 bits (114), Expect = 5e-17 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| ||||| || ||||||||||| |||| | || | ||||||||| || Sbjct 2124002 TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGC 2124061 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| |||||||||||||| | | || |||||||| || || || || Sbjct 2124062 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 2124121 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCC 152078 || || |||| | | |||| ||| ||| || || || || || || || || Sbjct 2124122 GCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCT 2124178 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || | |||||||| |||| ||||||||| Sbjct 2124179 GTCAAGGTCTTCACAAAGATCTGCATTTT 2124207 >seq1011 Length=3435084 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 2733949 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734008 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2734009 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734068 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 2734069 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734125 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2734126 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734160 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 2734177 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734236 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2734237 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734296 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 2734297 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734353 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2734354 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734388 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 2734405 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734464 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2734465 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734524 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 2734525 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734581 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 2734582 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2734616 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 2734633 AGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2734692 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 2734693 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTGTCC 2734752 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 2734753 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATG 2734809 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 2734810 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2734847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153718573279965