Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq551 152 4e-32 seq1011 136 3e-27 >seq551 Length=8489217 Score = 152 bits (168), Expect = 4e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||| ||| || ||| |||||| ||||||||||| || Sbjct 2123518 CATGCCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 2123577 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2123578 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 2123637 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| |||| | |||| | |||||||| || | Sbjct 2123638 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 2123696 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2123697 CAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2123749 Score = 150 bits (166), Expect = 1e-31 Identities = 177/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 2123746 CATGCCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 2123805 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2123806 GGACAAGGT-GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 2123864 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | |||||||| ||| ||||| |||| | |||| | |||||||| || Sbjct 2123865 GAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGC 2123923 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2123924 TCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2123977 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| |||| Sbjct 2123294 CCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2123353 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || |||||||||| | |||||| || | ||| Sbjct 2123354 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 2123413 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| |||| | |||| | |||||||| || || || Sbjct 2123414 ATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCTCAAC 2123472 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2123473 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2123521 Score = 129 bits (142), Expect = 4e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 ||| || ||| |||||| ||||||||||| |||| || |||| | || |||||||| Sbjct 2124001 GTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 2124060 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||||| | |||||| || | ||| | |||||||| ||| ||||| Sbjct 2124061 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 2124120 Query 44254 CTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | |||| | |||||||| || || ||||||| || || ||||| || | Sbjct 2124121 GGCCTTC-ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTCCCTG 2124179 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | | ||||||||| ||||| ||||| Sbjct 2124180 TCAAGGTCTTCACAAAGATCTGCAT 2124204 >seq1011 Length=3435084 Score = 136 bits (150), Expect = 3e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 2734614 CATGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 2734673 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2734674 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 2734733 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 2734734 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2734793 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||||| || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 2734794 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2734848 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 2734158 CATGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 2734217 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2734218 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 2734277 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 2734278 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2734337 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2734338 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2734389 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| || Sbjct 2734386 CATGCCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 2734445 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2734446 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGG 2734505 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | | | |||||||| || || Sbjct 2734506 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 2734565 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2734566 AACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2734617 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| ||||| || ||| |||||| ||||||||||| || | Sbjct 2733934 CCACCCCTCAGGCGCAGCACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2733993 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || |||||||||| | |||||| || | || Sbjct 2733994 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 2734053 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| || || ||| Sbjct 2734054 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 2734113 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2734114 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2734161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960061246555