Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014-
06-06] 6,915 sequences; 1,225,041,896 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1009 145 1e-29
seq103 107 3e-18
>seq1009
Length=7125706
Score = 145 bits (160), Expect = 1e-29
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||||| ||| || ||||||||| |||| ||| |||||||||||| || ||||||||
Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || || || |||||||| |||||||| || || || |||||||| | || ||
Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||| ||||| |||| || || |||| | ||| || ||| || | | || ||
Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|| | ||| | |||| ||| || || | ||| ||||||||||| || ||||| |||
Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799
Query 9484 TGA 9486
|||
Sbjct 829798 TGA 829796
Score = 132 bits (146), Expect = 7e-26
Identities = 222/319 (70%), Gaps = 4/319 (1%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| || || || ||| | |||| || ||| | | ||
Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||| || | || ||||| | ||| || || |||||||||||||||||| | ||||
Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
||||||| ||| |||| || ||||| || ||||| || || || | || | ||
Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| ||||| ||||| || || || ||||| || || | || || | ||||||||||
Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587
||| || | |||||| ||||| | ||||| || || || || |||||||||||
Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 831734
Query 8588 TTATTAATA---AAAAATA 8603
||||| ||| |||||||
Sbjct 831733 TTATTGATAAGTAAAAATA 831715
Score = 91.5 bits (100), Expect = 2e-13
Identities = 118/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969
|||||| || || | || ||||| || || || || || || || | |||| |||
Sbjct 828047 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 827988
Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029
||||||||||||||| | |||||||||||| ||| | ||||| ||||| | ||
Sbjct 827987 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAATTATAGTCACTATTGTAAGTTGG 827928
Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAA 10071
|||||||||||||||| ||||| |||| || ||||||
Sbjct 827927 TGGGCTGTCAATCAAATGTGATCTTGCTGA--AAGAAAAAAA 827888
>seq103
Length=224356
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
|||| |||||| | || || ||||||| || |||||||| ||||||||| | ||||
Sbjct 119663 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 119722
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| ||| | | || || ||||||||||||||||| || | ||| | ||||
Sbjct 119723 AGCAGATGGGGTTTCCGAGAAGCCCCTTGAGGGAGAACGGAGCTCCGATCTCCACCATGC 119782
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
| || || || || | ||||| |||| || || | || || || || | |||||
Sbjct 119783 TTTCCCCAAAAATTGAATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 119842
Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550
||| || | |||||| || ||
Sbjct 119843 GAGCATCAATGTCTCCATACAG 119864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716814834961600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |