Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Struthio_20camelus_20australis_20[refseq_20GCF_5F000698965.1_202014- 06-06] 6,915 sequences; 1,225,041,896 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1009 145 1e-29 seq103 107 3e-18 >seq1009 Length=7125706 Score = 145 bits (160), Expect = 1e-29 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || ||||||||| |||| ||| |||||||||||| || |||||||| Sbjct 830038 ATGAGTCTAGTAGTTTGGAACAGTCGCTCATCATCCCATTCTGGATGCTCCTGTTTCAGG 829979 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || || |||||||| |||||||| || || || |||||||| | || || Sbjct 829978 ATGTCACAGACTCTATTGTGTTCTCTGAGCCATATCGTAGCATACATCATTAAACCTGGG 829919 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | || || Sbjct 829918 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGAATGTGAGGTGGG 829859 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| || || | ||| ||||||||||| || ||||| ||| Sbjct 829858 TATAACATTTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCAATTATC 829799 Query 9484 TGA 9486 ||| Sbjct 829798 TGA 829796 Score = 132 bits (146), Expect = 7e-26 Identities = 222/319 (70%), Gaps = 4/319 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 832033 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGGAAGGAGGCAG 831974 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || || |||||||||||||||||| | |||| Sbjct 831973 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAAGTGCTGGGCTTCCAGTACTCAGGGG 831914 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| ||| |||| || ||||| || ||||| || || || | || | || Sbjct 831913 AGCAGATAGTGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATTTCTACCATTG 831854 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| ||||| || || || ||||| || || | || || | |||||||||| Sbjct 831853 TTTCACCAAAGATAGCACCTGGTCGTGGCTTCTCTACTAGGAGGCCTGGATACAGCTCCA 831794 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 831793 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGTAA 831734 Query 8588 TTATTAATA---AAAAATA 8603 ||||| ||| ||||||| Sbjct 831733 TTATTGATAAGTAAAAATA 831715 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || || || || || || | |||| ||| Sbjct 828047 ACCTTTAACACCCATTGGTGTTGGGCAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 827988 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||||||| | |||||||||||| ||| | ||||| ||||| | || Sbjct 827987 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAATTATAGTCACTATTGTAAGTTGG 827928 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAA 10071 |||||||||||||||| ||||| |||| || |||||| Sbjct 827927 TGGGCTGTCAATCAAATGTGATCTTGCTGA--AAGAAAAAAA 827888 >seq103 Length=224356 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| |||||| | || || ||||||| || |||||||| ||||||||| | |||| Sbjct 119663 TCTTAACGATCTCAAAGCCAGTTGCTCCGCCAAACGTGCTGGGTTTCCAGTACTCGGGGG 119722 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || ||||||||||||||||| || | ||| | |||| Sbjct 119723 AGCAGATGGGGTTTCCGAGAAGCCCCTTGAGGGAGAACGGAGCTCCGATCTCCACCATGC 119782 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| |||| || || | || || || || | ||||| Sbjct 119783 TTTCCCCAAAAATTGAATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 119842 Query 8529 CAGCCTCGACGTCTCCGTAAAG 8550 ||| || | |||||| || || Sbjct 119843 GAGCATCAATGTCTCCATACAG 119864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716814834961600