Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 4e-15 seq113 91.5 2e-13 >seq16 Length=7092959 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16983 ATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTT 17042 || |||| ||||| ||||| ||||| |||||||| || | || ||||| ||||| || Sbjct 6186512 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 6186571 Query 17043 TCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAA 17102 |||| | |||||| || | || || || ||||||||||| || || || |||| ||||| Sbjct 6186572 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 6186631 Query 17103 ACGCGATTAATCGTTC 17118 | || | || ||||| Sbjct 6186632 AAGCTACTACACGTTC 6186647 >seq113 Length=2896879 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| ||||||||||| || || ||||| || |||||| || | |||| Sbjct 22597 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 22538 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||||||||| || || || || || |||||||| || || || || | ||||| | Sbjct 22537 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 22478 Query 17106 CGA 17108 ||| Sbjct 22477 CGA 22475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517530325935480