Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq25 150 2e-31 seq102 105 8e-18 >seq25 Length=6377837 Score = 150 bits (166), Expect = 2e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||||| ||| | | ||||||||||||||||||||| | |||||||||||| Sbjct 1491596 GGGCACGCCGTCAGGACCAATGAGGAACTTCTCGAAGTTCCAGGCGATGTCGTTGCGGCA 1491655 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | | ||||||| || Sbjct 1491656 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGACGGGTCGTCGTGCGG 1491715 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||||| |||||| || || || | ||||| ||||| Sbjct 1491716 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTC 1491775 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||| || || || || |||| | | || || ||||| || ||||||| Sbjct 1491776 GCACTTCTCGAACAGGATGAAATTAGGCTTGTACCCTTTGCCAGGGCGAACGTGCT 1491831 >seq102 Length=3080507 Score = 105 bits (116), Expect = 8e-18 Identities = 117/154 (76%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 100630 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 100687 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 100688 GCGGGCT-TGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGTGAAG 100746 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||||||||| || | || |||||||| || Sbjct 100747 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAA 100780 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/242 (69%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 83126 CCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGA 83185 || |||| ||||||| ||||||||| || ||||||| | |||| ||| | ||| || Sbjct 100290 CCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATGTCGGAGCGCCGCACAGGG 100349 Query 83186 GACCAGG---CAATGAGCTGGGGGTCGC---TCACGAGCGTGCTCATGTCGTCGCTAGGC 83239 ||||| ||| ||| |||| |||| ||| | | ||| | ||||| || Sbjct 100350 CTCCAGGTGACAA--AGC-GGGGCTCGCCCATCAGGTGTGTGGCC---TCGTCAGCCGGT 100403 Query 83240 GCCGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || |||||| | || | ||| ||||||| | ||||| | | ||||| |||| Sbjct 100404 GCAGGCAGGTGAGCCTTG-AGGTAGGCGAACACAGGATGGGTGTCGGTCCCGTTCACCTG 100462 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || || |||||||| Sbjct 100463 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACATGCTTCAG 100522 Query 83359 GG 83360 || Sbjct 100523 GG 100524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608778832884440