Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq78 149 6e-31 seq240 138 1e-27 seq16 129 6e-25 seq113 87.8 2e-12 >seq78 Length=3980192 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 3095478 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3095537 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 3095538 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 3095596 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 3095597 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 3095656 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| ||||| || ||| ||||| | ||||| ||| Sbjct 3095657 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 3095705 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || ||||| || Sbjct 3094898 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 3094957 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | ||| |||||| || || | || || |||||||| || | || Sbjct 3094958 AGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCAGAT 3095017 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | |||||| ||| ||| || Sbjct 3095018 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGATTAT 3095077 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| || |||| ||||| Sbjct 3095078 AACATCCAGAAAGAATCCACCCTGCA 3095103 >seq240 Length=1350550 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || || |||||||| ||||||||| | || ||||| | Sbjct 1127918 AAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCC 1127977 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | | | |||||| || || | ||||| || ||||| ||| | || Sbjct 1127978 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGA 1128037 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || | ||| ||||| ||| |||| || | || ||||| |||||| Sbjct 1128038 CCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACTA 1128097 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| || |||| ||||| | ||| ||||| || | || || Sbjct 1128098 CAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGCGGTGG 1128148 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || |||||||| ||||||||| | || || || ||| Sbjct 1128149 AATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGCCCAG 1128208 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| ||||| ||||| | ||||| Sbjct 1128209 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 1128268 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 1128269 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1128328 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| || |||| |||||||| ||| ||||| | ||||| || Sbjct 1128329 CATCCAGAAAGAATCCACCCTGCATCTCGTGCTGCGCCTCAGGGGTGG 1128376 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| || ||||| |||||||| | || ||||| ||| Sbjct 1128378 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCCAGT 1128437 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 1128438 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 1128497 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || |||||||||||||| || | || ||||| ||||||||| Sbjct 1128498 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 1128557 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || ||||| | ||||| || Sbjct 1128558 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCGCCTCAGGGGTGG 1128604 >seq16 Length=7092959 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 6189180 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 6189121 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| || |||||||| || |||||||| | ||||||||| Sbjct 6189120 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 6189067 >seq113 Length=2896879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 22472 TGGTCGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 22531 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| |||||| || || ||| | Sbjct 22532 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAACGAACTTATTAGCAGAG 22591 Query 117162 ACGAGG 117167 | |||| Sbjct 22592 ATGAGG 22597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203994593360