Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 2e-15 >seq38 Length=5833172 Score = 96.9 bits (106), Expect = 2e-15 Identities = 129/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 ||||||||||||||||||||||| ||||| ||||| || ||||| | || || || ||| Sbjct 4399510 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 4399569 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || | |||||| ||||||| |||| || || ||||| ||||||||||| Sbjct 4399570 CTGCTGCTGAAACCCTGCTTATC----CAGGAACTCGCGTGACCCATTAGCATCCCAAAT 4399625 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA 97573 | |||||| ||| | ||||||||| | ||||| || || ||||| |||| Sbjct 4399626 CTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACA 4399679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| |||| | || |||||||| ||||| ||||||||||| ||| Sbjct 4395921 GTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCT 4395980 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 |||||||| || | || || ||||| | || || || | | || | ||||| Sbjct 4395981 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCTTTTAGAACATAG 4396040 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGA 97288 ||||| | | |||| || || ||||| ||||| | | || ||||| || Sbjct 4396041 AACTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCTGGGAAATATCTAGGA 4396092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774021398770