Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq29 111 3e-19 >seq29 Length=6194771 Score = 111 bits (122), Expect = 3e-19 Identities = 106/133 (80%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| |||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 386390 GCTTTTTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 386449 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || |||||||| |||| || |||||| || || ||||||||||| ||| | || || Sbjct 386450 TTAGCAGCTTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 386508 Query 52176 AATGCAGTTGGTA 52188 | ||||||||||| Sbjct 386509 ATTGCAGTTGGTA 386521 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 387012 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 387071 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 387072 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 387131 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | || || ||| Sbjct 387132 TAACTTCTACTATCGGACTTATAAG 387156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923169554154440