Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq231 102 9e-17 >seq231 Length=1435942 Score = 102 bits (112), Expect = 9e-17 Identities = 148/206 (72%), Gaps = 21/206 (10%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCT 1988 |||||||||||||| ||| | ||||| | ||||||||||||||||| |||||||||||| Sbjct 1032903 AGGCCGCGGTCGGCAGGCTCAGCGCCACTACCGCCGCGAAGAGTTCGTCTCTGTCAGCCT 1032962 Query 1989 CGGCGGCGCCCGGGAGATG-----CGgc-----------gcgcggccccgcgcccccagc 2032 ||||| | ||||||| | |||| | || ||| | | ||||||| Sbjct 1032963 TGGCGGAGGCCGGGAGCAGAGGGCCGGCCCGCCCACCCTGGGCAGCCGGGGGACCCCAGC 1033022 Query 2033 agagcaacacgggagcggcgcccccggg-gc--aacccccgcgccccccTGCGCCGTGGG 2089 ||||||| | ||| ||||||| ||||| || | | |||| | ||| | | |||| Sbjct 1033023 AGAGCAAAAAGGG-GCGGCGCTGCCGGGCGCTGAGCAGCCGCAGCTCCCGGAGAAGTGGA 1033081 Query 2090 GCGCGCGGACGGCGTCGCTCCCACAC 2115 | |||||| ||||| ||| || |||| Sbjct 1033082 GTGCGCGGCCGGCGCCGCCCCGACAC 1033107 Score = 102 bits (112), Expect = 9e-17 Identities = 148/206 (72%), Gaps = 21/206 (10%) Strand=Plus/Minus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561 |||| || ||| ||||| |||||| | |||| | | ||| | |||| | | || || Sbjct 1033107 GTGTCGGGGCGGCGCCGGCCGCGCACTCCACTTCTCCGGGAGCTGCGGCTGCTCAGCGCC 1033048 Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgc-----------gc 139610 ||| ||||||| ||| | |||||||||||||| | | ||| || | || Sbjct 1033047 CGGCAGCGCCGC-CCCTTTTTGCTCTGCTGGGGTCCCCCGGCTGCCCAGGGTGGGCGGGC 1032989 Query 139611 CG-----CATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAAT 139665 || | ||||||| | ||||| |||||||||||| ||||||||||||||||| | | Sbjct 1032988 CGGCCCTCTGCTCCCGGCCTCCGCCAAGGCTGACAGAGACGAACTCTTCGCGGCGGTAGT 1032929 Query 139666 GGCG-GGTGCCGGCCGACCGCGGCCT 139690 |||| | ||| |||||||||||||| Sbjct 1032928 GGCGCTGAGCCTGCCGACCGCGGCCT 1032903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569052005357040