Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq58 228 8e-55 >seq58 Length=4947072 Score = 228 bits (252), Expect = 8e-55 Identities = 299/416 (72%), Gaps = 7/416 (2%) Strand=Plus/Minus Query 125090 CCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGG 125149 ||||| || || ||| ||||||||||||||| || || ||||||||| |||| |||| Sbjct 3527574 CCGCCTGTCCCC-GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCGCGCTCCTCGG 3527516 Query 125150 CCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGT 125209 ||||||| |||||||| ||||||| || || ||||| || | ||||| ||| Sbjct 3527515 CCAGGTAGGCGGCCAGGTGGGCGGCCAGGCAGCGCGGCCCGTCGCCGCAGCCCCGCTCGG 3527456 Query 125210 ACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGA 125269 |||||| | ||||||| |||| ||| || | | |||||| || |||||||||| Sbjct 3527455 CCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCGGCCCCAGTTGA 3527396 Query 125270 AGCCGCTTCCGGAGTTCAATTCAGACACCACACTT---TGCAGCGCCGACAACGCTGCCT 125326 ||||| ||| | || | | | |||| ||| ||||||| | ||| || Sbjct 3527395 GGCCGCCGTCGGCCTCCAGCTGCGCCGCCACCCTTCCGAGCAGCGCGG---CCGCCTCCC 3527339 Query 125327 GCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCA 125386 ||| | | | ||| | ||||||||||||||| |||||||||| ||| ||||||||| Sbjct 3527338 GCGGCTCAGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTGCCGCTCCA 3527279 Query 125387 GCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGC 125446 ||||||||||||| ||||| || || || || ||| || | | || Sbjct 3527278 GCTCGGCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCGCGGCGCCGC 3527219 Query 125447 CGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAG 125502 ||| || |||||||||||||||||||||||||| |||||| || |||||||| ||| Sbjct 3527218 CGCCGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAG 3527163 Score = 219 bits (242), Expect = 4e-52 Identities = 297/416 (71%), Gaps = 7/416 (2%) Strand=Plus/Plus Query 157094 CTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCACTGCTGCGGCAA 157153 ||| |||||||| || |||||| |||||||||||||||||||||||||| || ||||| Sbjct 3527163 CTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCACCGCGGCGGCGG 3527222 Query 157154 GGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNNNNNNNNNNNGA 157213 | | || ||| || || || |||||||| | ||||||||| || || Sbjct 3527223 CGCCGCGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCGGCCGAGCTGGA 3527282 Query 157214 GCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGCGGCACGCAGGC 157273 ||||| ||| |||||||||| ||||||||||||||| | ||| | | | ||| || Sbjct 3527283 GCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCTGAGCCGCGGGA 3527342 Query 157274 AGCGTTGTCGGCGCTGCA---AAGTGTGGTGTCTGAATTGAACTCCGGAAGCGGCTTCAA 157330 ||| | ||||||| ||| |||| | | | || | ||| ||||| |||| Sbjct 3527343 GGCGG---CCGCGCTGCTCGGAAGGGTGGCGGCGCAGCTGGAGGCCGACGGCGGCCTCAA 3527399 Query 157331 CTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCGCTGTACGA 157390 |||||| || |||||| | | || ||| |||| ||||||| | |||||| ||| Sbjct 3527400 CTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCGCTGGCCGA 3527459 Query 157391 AAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTACCTGGCCGA 157450 ||||| | || ||||| || || ||||||| |||||||| ||||||||||| Sbjct 3527460 GCGGGGCTGCGGCGACGGGCCGCGCTGCCTGGCCGCCCACCTGGCCGCCTACCTGGCCGA 3527519 Query 157451 AGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGGGCGG 157506 |||| ||||||||| || || ||||||||||||||| ||| || || ||||| Sbjct 3527520 GGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGC-GGGGACAGGCGG 3527574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509168972707200