Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq58 340 1e-88 seq1 89.7 4e-13 >seq58 Length=4947072 Score = 340 bits (376), Expect = 1e-88 Identities = 746/1111 (67%), Gaps = 20/1111 (2%) Strand=Plus/Minus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || |||||| || ||| | |||| | || | Sbjct 22460 CATCAACTGCTCGGGGGTCGTCCGCGGGGACGAGACAGCCATCCGGGAGGCGCAGCTCAA 22401 Query 107582 CAACCTGGAAGT---GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACAT 107638 |||||||||||| ||| | |||| || || | ||| ||| ||| ||||| Sbjct 22400 CAACCTGGAAGTAGCGAACAGAAAGGCTTCACCGACGCCCGGCGACTA---CCTGAACAT 22344 Query 107639 AACCAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGA 107694 || || ||||| |||| |||||| | ||| || | ||| ||||||| || | Sbjct 22343 TACGAGGGACTGCAGAGC-CTTCAAAGAGACCC---GGCGCTACATCGAGTTCCCGCTCA 22288 Query 107695 GTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 | | || ||| || |||||||| |||||||| ||||| |||| | || || || | Sbjct 22287 GCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCACCACAAAATCGACA 22228 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 ||||| ||||| ||||| |||| || ||||| ||||| | |||||||||||||||| Sbjct 22227 TGTTTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAATGTCTACTGTGTCCACGTGG 22168 Query 107815 ATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCA 107874 | || ||||| | | ||| | |||| || ||||||| | |||||||||||| Sbjct 22167 ACAGCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCA 22108 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | |||||| ||||||| ||| ||||| |||||| |||||||| | |||| | Sbjct 22107 ACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCGCCTGGTCCCGGCTGCAGG 22048 Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGA 107994 | ||||| ||||| ||| ||||| |||| |||||| | ||||||||| ||| | | | Sbjct 22047 CCGACCTCAACTGCATGCAAGACCTGCTGCAGAGCCCGGTGCCATGGCGCTACCTCATCA 21988 Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGA 108054 | || ||||| || ||||||||||| |||||||| |||||||| |||| | | || || Sbjct 21987 ACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCCGGACGCTGCAGC 21928 Query 108055 TGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCT 108114 || || |||| | |||| ||||||| ||| || || | |||| | | || | Sbjct 21927 TGCTGCAGGGCCACAACAACGTGGAGTCGGAGAGGCCCTCAGCCGCCAAGCAGCAGCGTT 21868 Query 108115 GGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTC 108174 || | |||| | | |||||| || | | | | || | ||| ||| || | Sbjct 21867 GGCAGTACCACCACGAGGTGGGGGAGAGCATCTCTCGCACTGCCCAGAAGAAACTGCCGC 21808 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 | || | | ||||||||||| || | || || | | | || | ||| | Sbjct 21807 CACCCCACGGCTACCCCATGTTCACGGGCAGCGCGTACCACGCCCTCACACGGGACTTCG 21748 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 | || || |||| | ||||| | | | || | | || ||| ||| |||| || Sbjct 21747 TGCAGTATATCTTCAAGAACCCCACGGCACGAAAGTTCCTCGAGTGGTCCAAGGACAGCT 21688 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTG---GCT 108351 | ||||| || || ||| |||||||||| || | || ||| | |||| | || Sbjct 21687 ACAGCCCTGATGAGCACGTCTGGGCCACTCTGAACCGCATGCCGGGCGTGCCGGGGAGCA 21628 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 | || | || ||||| || |||| ||||||| ||| | || | || |||| Sbjct 21627 CGCCCCCGA---ACGACAAGTTCCAGCTCTCGGACATGAACGCCGTTCCCCGTCTGGTCA 21571 Query 108412 AGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAA 108471 ||||| ||||| ||||| || |||||| ||| || || || | |||||| | || Sbjct 21570 AGTGGGAGTACATGGAGGGGGACATCAGCAAGGGCGCTCCCTACCCGCCCTGCACCGGCC 21511 Query 108472 TCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACC 108531 ||| | | | ||||||||||| || |||| || ||| || |||||| || ||| | | Sbjct 21510 GCCACCAGCGCGCCATCTGCATCTATGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGC 21451 Query 108532 ATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAG 108591 | || |||||||| |||||||| ||||| | |||| ||| | | | ||||| | | Sbjct 21450 ACCATCTCTTGGCCAACAAGTTCGACCCCGAGATGGACGATGCGGCCATCCAGTGTCTCG 21391 Query 108592 AAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | |||||||| || || |||||| | || || Sbjct 21390 AGGAGTACCTGCGCCACAAGGCCCTGTACGG 21360 >seq1 Length=11828398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 196/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| ||||| || || ||||| || || |||| ||||| || ||||| | Sbjct 764872 TTGAGTGGGCGAAAGATACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 764813 Query 108334 CTCCGTGGA-TGCCTGGC----TCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACAT 108388 ||| || | | || ||| ||| |||| || || |||||| || | || ||||| Sbjct 764812 -TCCCTGAAGTCCCAGGCGCATTCTCTTCC-AGTGAC---AAGTATGACGTTTCTGACAT 764758 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 || ||| | |||||| | ||||||||||||||| || || || || || || || Sbjct 764757 GAATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGC 764698 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || |||| ||| |||| | || | | |||| ||| || | || || Sbjct 764697 ACCCTACCCACCGTGCAGTGGAGTTCACATTCGTTCTGTCTGTGTTTTTGGAGTAGGAGA 764638 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||| ||||||| || | ||||| ||| | || || || ||||||||| Sbjct 764637 CCTGAACTGGATGCTACGAAACCACCACTTATTTGCTAATAAGTTTGAC 764589 Score = 82.4 bits (90), Expect = 5e-11 Identities = 226/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 765461 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 765402 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| || ||||| | ||||| | Sbjct 765401 ATTGAGATGCTTGATAGACTTCTAAGATCGATCTATGCTCCACAGAATTTTTACTGCATT 765342 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 765341 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGAATAGTGTCATGT 765282 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 765281 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 765222 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || ||| | ||| | | ||||| | Sbjct 765221 GTGCAGGCAGACATTAACTGCATGAAAGATCT-CTACAG-GAGAAGTTCAAACTGGAAAT 765164 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | || ||| || | ||||| || ||||||||||| Sbjct 765163 ATCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 765121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348258778674114