Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq38 116 3e-21 >seq38 Length=5833172 Score = 116 bits (128), Expect = 3e-21 Identities = 122/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATA-ATGAATTGTC 20459 ||||||||||||||||| ||| || ||||| || || ||| |||| | ||||||||| Sbjct 4396075 ATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTT-CTAAAAGGTGAATTGTC 4396017 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 || ||| | ||||| | || | || |||||||| || || ||||| |||||||| || Sbjct 4396016 TTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAG 4395957 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| | ||||| || || |||||||| ||||| |||| Sbjct 4395956 CTATTCACTGCTCACTTACATGATTGCCCATGTCACAG 4395919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172513605145