Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq240 113 3e-20 seq78 98.7 8e-16 >seq240 Length=1350550 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| || || |||||||| || ||||||||||||| Sbjct 1128149 TCCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 1128090 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| || ||||| || | || || || || || || ||| Sbjct 1128089 CAGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGG 1128030 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | |||||| | ||| ||||||| ||||||| Sbjct 1128029 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 1127970 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAttttt 18329 |||| ||||||| | ||||| |||| || || || || || ||||||||| Sbjct 1127969 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTTT 1127918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | || || | |||||||| || Sbjct 1128352 TGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGCTGC 1128293 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || || | || ||||| || || | Sbjct 1128292 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTG 1128233 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| |||||| |||| ||||||| | ||||| ||| Sbjct 1128232 GCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTCTTGCCCGTC 1128173 Query 18303 AATGTTTTTACAAAAATTTGCAtt 18326 | || || ||||| || |||||| Sbjct 1128172 AGGGTCTTGACAAAGATCTGCATT 1128149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || |||| || | || || | ||| || || || || || || |||||||||| Sbjct 1128608 GTTA-CCACCCCTGAGGCGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGT 1128550 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 | | || || | ||| |||| |||||||| ||| |||| | || || || || Sbjct 1128549 CAGACAGGGTACGGCCATCCTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTG 1128490 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 ||| | ||| ||||| || || | |||||| | ||| ||||||| ||||| Sbjct 1128489 GGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCT 1128430 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 || ||| | |||||| | ||||| |||| || || ||||| || ||||| Sbjct 1128429 CGACTTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 >seq78 Length=3980192 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||||| || || | |||| Sbjct 3095689 AGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 3095630 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || || | || ||||| || Sbjct 3095629 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCC 3095570 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| ||||||| ||| | ||||||| | Sbjct 3095569 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTC 3095510 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325 ||||| |||| || || |||||||| ||||| Sbjct 3095509 TTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379333084494945