Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq113 87.8 3e-12 seq314 84.2 3e-11 >seq113 Length=2896879 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || ||||| |||||||||||||||||| ||||| || Sbjct 22465 GAGAGAGTGGTCGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 22524 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 22525 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 22565 >seq314 Length=901204 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 || || ||| | ||| ||||| |||| || |||||| |||| | ||||| || | || Sbjct 490973 CCTGGGGCTTTTGCCATCTACCTGGAGCCGTGGCACTTGGACATCTTTGAGTTCCTGGAC 491032 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 || || ||| | ||| |||||| |||||||||||| |||| | ||| |||||| Sbjct 491033 TTGAAGAAGAACACAGGCAAAGAAGAGCAGCGAGCCAGGGACCTGTTCTTTGCTCTCTGG 491092 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGT 97039 | || ||| | ||||||||||| || Sbjct 491093 ATCCCTGATCTCTTCATGAAGCGAGT 491118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037329490360