Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq29 172 1e-37 seq240 165 2e-35 seq78 165 2e-35 seq113 122 2e-22 seq16 107 4e-18 seq167 89.7 1e-12 >seq29 Length=6194771 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| || ||||||||| Sbjct 384027 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAATATTCTTCATC 384086 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 384087 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 384146 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 384147 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 384189 >seq240 Length=1350550 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || |||||| Sbjct 1128379 ATCCCACCCCTGAGGCGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCA 1128320 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || |||||| Sbjct 1128319 GACAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 1128260 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| ||||| || || ||||| || | ||| || || || ||| Sbjct 1128259 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCT 1128200 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || || || || || ||||| ||||||||| Sbjct 1128199 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1128149 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| | || || ||| Sbjct 1128118 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGGCCATCTTCCAACTGCTTGCCA 1128059 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| |||||||| || || || || || ||||| || || || ||||| || || Sbjct 1128058 GCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTG 1127999 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || || ||||| || || || ||||| || || || || Sbjct 1127998 ACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 1127939 Query 104543 TTTACAAATATCTGCATTTT 104562 || || || ||||||||||| Sbjct 1127938 TTGACGAAGATCTGCATTTT 1127919 >seq78 Length=3980192 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || ||||| || || ||||| | || ||||| || || || ||| Sbjct 3095097 GTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 3095038 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| ||||| ||||| || || || |||||||| ||||| || || Sbjct 3095037 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTG 3094978 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || || || ||||| ||||| || || Sbjct 3094977 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 3094918 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| ||| Sbjct 3094917 TTCACAAAGATCTGCATGTTG 3094897 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | || ||||| || || || ||| Sbjct 3095674 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 3095615 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| ||||| || || ||||| ||||| || || Sbjct 3095614 GCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 3095555 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || || ||||| ||||| || || Sbjct 3095554 ACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 3095495 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 3095494 TTGACAAAAATCTGCAT 3095478 >seq113 Length=2896879 Score = 122 bits (134), Expect = 2e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| || |||||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 22474 GTCGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 22533 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| |||||| | || ||||| || Sbjct 22534 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAACGAACTTATTAGCAGAGAT 22593 Query 269258 GA 269259 || Sbjct 22594 GA 22595 >seq16 Length=7092959 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 6186650 GGAGAACGTGTAGTAGCTTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 6186591 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| | Sbjct 6186590 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 6186531 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 6186530 ATCAGTAGAGATGA 6186517 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 6188335 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 6188276 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 6188275 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 6188216 Query 269016 T 269016 | Sbjct 6188215 T 6188215 >seq167 Length=2067754 Score = 89.7 bits (98), Expect = 1e-12 Identities = 183/270 (68%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| ||||||| | ||| ||||||||||| | ||| |||||| | ||||| |||||| Sbjct 23596 CAGTGAATATTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAAACAGGTGGAAT 23655 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188 ||||| |||||| |||||| |||| | || |||| ||| | || | |||| Sbjct 23656 TTTCAACTGTTTGCCATTCCAGGTTTCTGTTTTTCCAGATGACAAGGA-TTCC---CCAC 23711 Query 174189 GCGATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTA 174248 || || || ||| | | |||||| || || || | | | |||||||| |||| Sbjct 23712 GCAGGTTGGCAACAAGCTGTTTAACTTCTTTCATTTTCCCCTTGGCATAAAATGCCTGTG 23771 Query 174249 TTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAA 174308 ||||||| || | || |||| || |||| || || || ||||| || |||| Sbjct 23772 TTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAA 23831 Query 174309 CTATCCTAACGTATTCACCAGGTACATAAC 174338 ||| || ||||||| | ||| ||| Sbjct 23832 AGATCTGAATTGATTCACCTGAAACAAAAC 23861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151363569838588