Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq101 87.8 9e-13 seq42 84.2 1e-11 seq205 82.4 4e-11 >seq101 Length=3081212 Score = 87.8 bits (96), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | | |||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 405868 TAAAAAAGCCTACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 405927 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 405928 CGCTCTAACCAACTGAGCTAACCGGCC 405954 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 401603 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 401662 Query 11512 CAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||| Sbjct 401663 CAACTGAGCTAACCGGCCG 401681 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 407171 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 407230 Query 11528 CC 11529 || Sbjct 407231 CC 407232 >seq42 Length=5590558 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/88 (81%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11446 AAAATCAAATT----GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||| |||||| ||||| | |||||||||| ||||||| ||||||||||||| Sbjct 2428912 AAAAACAAATTTTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACC 2428971 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 2428972 ACGCTCTAACCAACTGAGCTAACCGGCC 2428999 >seq205 Length=1662396 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1206750 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1206691 Query 11528 CC 11529 || Sbjct 1206690 CC 1206689 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483675672436