Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq184 167 3e-36 seq115 104 3e-17 >seq184 Length=1874329 Score = 167 bits (184), Expect = 3e-36 Identities = 215/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || ||||||||| | |||| || ||| | | || Sbjct 273664 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 273723 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || || ||||||||||| |||||||| | |||| Sbjct 273724 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 273783 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| | || |||| || || || ||||| ||||| ||||| | ||| | ||| Sbjct 273784 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 273843 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 273844 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 273903 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| ||||| || || || || || || || || |||||||||| Sbjct 273904 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTG 273960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || || ||||| ||| || || || | || || || Sbjct 275600 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGTCAGGGTGCTGGCGCTTGAGC 275659 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || ||||| || | |||||| || | |||||||| || ||||||||||| || || ||| Sbjct 275660 ACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 275719 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 ||||| || || |||| || || || | | ||| | || ||||| | ||| || Sbjct 275720 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACATGGGGTGGG 275779 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | |||| || || | || || |||||||| || ||||| ||| Sbjct 275780 TACAGCATCTCTGCCTGCGTGTCCCGCACTGTCGGCGGGTACATTTCTCCATCAATCATC 275839 Query 9862 TG 9863 || Sbjct 275840 TG 275841 >seq115 Length=2854308 Score = 104 bits (114), Expect = 3e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || | || || || || |||||||||||||| | |||| Sbjct 1602785 TCTTAACAATCTCAAAGCCAGTTGCCCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1602844 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1602845 AGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1602904 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || || | || || || | ||| ||||||| Sbjct 1602905 TTTCTCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 1602964 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1602965 GAGCATCAATGTCTCCATACAG 1602986 Score = 86.0 bits (94), Expect = 9e-12 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| || | ||||| || || || ||||||||||| ||||| Sbjct 1604717 TCACCGATGAGGATGAGCCGTGCAGTCTGGAAGAGCTGCTCGTCACTCCAGGTGGGATGA 1604776 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | || || | || ||||| | |||||| || | ||||||| || || || | Sbjct 1604777 TCCCTCTTGAGCAGGTCACACACACGGTTGTGCTCACGTAGCCAGAGCGTGGCATAGACA 1604836 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| ||| || || |||| || || || ||||| || | | |||| Sbjct 1604837 CAGAGCCCTGGCAGCAGCCCGAACACCTCCTGCCCCACGGCCAGCTGCTGCTCCTTGGGC 1604896 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | | || || | |||||| ||| || | || ||||| ||| || |||| ||| Sbjct 1604897 ACGCCCGACGGGTACACCATGTGAACCGGGGCCTCGGTGACCATGGGCGGGTACACTTCT 1604956 Query 9850 CCGTC 9854 || || Sbjct 1604957 CCATC 1604961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708503889661840