Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq78 125 6e-24 seq240 118 1e-21 >seq78 Length=3980192 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94805 TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGT 94864 |||| || ||||| || || | |||||||||| | |||| ||| |||||||| Sbjct 3095103 TGCAGGGTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGC 3095044 Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || || ||||||| | || ||||||||||||||||| || || || || | || || Sbjct 3095043 TTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTG 3094984 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 |||||||| | | |||||| | | ||||| |||| |||||||| || ||||| Sbjct 3094983 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 3094924 Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008 || || |||||||||||||||||| Sbjct 3094923 AGGGTCTTCACAAAGATCTGCATG 3094900 >seq240 Length=1350550 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||||| ||| || ||||| || | ||| || || || || | | Sbjct 1128592 CGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1128533 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| || ||||||| || || ||||| ||||| ||||| || || ||| Sbjct 1128532 TCCTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 1128473 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | |||||| | | ||||| || | |||||| Sbjct 1128472 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATG 1128413 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || |||||||||||||| Sbjct 1128412 GTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || | || |||| ||||||||||| ||| ||||| || || | ||| || || Sbjct 1128152 CATTCCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTC 1128093 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || || | ||| |||| ||| || || | || || | || ||||| ||||| Sbjct 1128092 GGACAGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGG 1128033 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| ||||| | || || |||||||| | | |||||| | | || Sbjct 1128032 GGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 1127973 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| |||||||| || || || || || || || ||||||||||| Sbjct 1127972 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1127922 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | |||| || ||||| || || | ||| || || || || | | Sbjct 1128364 CGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1128305 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || || || ||| Sbjct 1128304 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTG 1128245 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | |||||| | | || || |||| |||||| Sbjct 1128244 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATG 1128185 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||||||||| Sbjct 1128184 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1128150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277969805960