Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq78 86.0 6e-12 seq40 86.0 6e-12 >seq78 Length=3980192 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | |||||| | ||| | || | | Sbjct 3095478 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3095537 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 3095538 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCAG 3095597 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| | | | | |||||| ||| Sbjct 3095598 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 3095657 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| || | || ||||| ||| | || || || || Sbjct 3095658 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGG 3095704 >seq40 Length=5648287 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||| || |||||||||||||| ||||| || |||||||| Sbjct 4721462 GAGGGCAAGATGCACGGCTTCCTGCGGATGTACTGGGCCAAGAAGATCCTGGAGTGGACG 4721403 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | | | || ||| |||| || ||| | | ||||| || ||||| | ||| || ||| Sbjct 4721402 CGATCCCCTGAGGAGGCCCTGCAGTTTGCCATTTACCTCAACGACCGCTACGAGCTGGAC 4721343 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || | || || || || || || ||| Sbjct 4721342 GGGAGGGACCCCAATGGATACGTAGGT 4721316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478648273475920