Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq78 120 3e-22 seq314 118 1e-21 seq240 100 3e-16 >seq78 Length=3980192 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | |||||||| | || | ||| || || || || |||||||| ||| Sbjct 3095706 AGCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 3095647 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||||| || || ||||||||||| || |||| | | ||||||||| |||| Sbjct 3095646 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAG 3095587 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||||||| || ||||| ||| || ||||| | ||| | || || ||| ||||| Sbjct 3095586 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGA 3095527 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || ||||||||||| Sbjct 3095526 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 >seq314 Length=901204 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| |||||||||| ||||| ||||| || |||||||| ||||| || ||||| | Sbjct 492516 TGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 492457 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| | |||||||||||||||||| || ||||||||| ||| | Sbjct 492456 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGG 492397 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 492396 ACTCGATGAT 492387 >seq240 Length=1350550 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | ||| | ||| || || || || |||||||| || || ||| || Sbjct 1128364 CGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1128305 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | ||||||||| ||||||||||| || ||| Sbjct 1128304 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTG 1128245 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 1128244 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATG 1128185 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 1128184 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1128150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | || | ||||||||||| || |||||||| || || ||| || Sbjct 1128592 CGCAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1128533 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||| ||||| || |||| || | ||||||||| || || || || || ||| Sbjct 1128532 TCCTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 1128473 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||||| || | || | | Sbjct 1128472 TCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATG 1128413 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 1128412 GTCTTGCCAGTCAGCGTCTTGACAAAGATCTGCAT 1128378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998869722240