Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq240 113 4e-20 seq78 113 4e-20 >seq240 Length=1350550 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||| | || ||| | | ||||||| ||| Sbjct 1128580 TGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGT 1128521 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || | || ||| ||||| || | |||||| ||||| || || Sbjct 1128520 TTGCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTG 1128461 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||||| ||||| |||||||| || || | Sbjct 1128460 GC--CTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATGGTCTTGCCAG 1128403 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||||||| |||||||| Sbjct 1128402 TCAGCGTCTTGACAAAGATCTGCAT 1128378 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||| || || || ||||||||||||| | Sbjct 1128148 CCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 1128089 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || ||||| || |||| |||| ||| ||||| || Sbjct 1128088 AGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGA 1128029 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | ||||| | |||||| Sbjct 1128028 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCGA 1127971 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | ||||||||| || || ||||| || ||||| || ||||||||||| Sbjct 1127970 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 1127919 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||| || || || ||||||||||| | || ||| | | || Sbjct 1128362 CAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 1128303 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||||| ||||| Sbjct 1128302 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTC 1128243 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| || | ||||||| Sbjct 1128242 CTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATG 1128185 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || |||||||| ||||||||| Sbjct 1128184 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATT 1128149 >seq78 Length=3980192 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||| || || || ||||||||||||| || ||| | || Sbjct 3095690 CAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 3095631 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| ||||| ||| | ||||| ||||| Sbjct 3095630 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTGTC 3095571 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | |||||| ||||| ||||||| Sbjct 3095570 CTGGATCTTGGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3095513 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || ||||||||||||||||| Sbjct 3095512 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405076343719390