Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq513 104 2e-17 seq301 100 2e-16 >seq513 Length=162718 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| Sbjct 29347 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTGCTTGTTGGCTATCGGTCTCAT 29288 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 29287 GCTGGTATTTAGCCTTA 29271 >seq301 Length=911233 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||| || |||||||| ||| | | |||||||| Sbjct 37262 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGAGAGAGTGAGAATCTCGT 37203 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||| || Sbjct 37202 TCATCCATTCATGCATGTCACTAATTAGATGATGA 37168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937561998991