Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq240 102 7e-17 >seq240 Length=1350550 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||||| || || ||||| || |||| ||||| ||||| ||| | || || || Sbjct 1127918 AAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCC 1127977 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| || | ||| | || || || || ||||| |||||| ||||| || Sbjct 1127978 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGA 1128037 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 || || ||||| |||| || ||||| || ||||||||| || || |||| || Sbjct 1128038 CCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACTA 1128097 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || || || ||| |||| ||||||||||| Sbjct 1128098 CAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGCGGTGG 1128148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423027827156200