Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq314 143 5e-29 seq113 93.3 8e-14 >seq314 Length=901204 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||| | || ||||||||||| ||||| ||||||||||||| Sbjct 492534 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 492475 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 492474 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 492415 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 492414 TGCCAGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 492355 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 492354 TGCGCACGCGGCCCTGCCGCTCGTAGC 492328 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || ||||||||||| || ||| |||||||||| | |||||| || Sbjct 491113 CTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGCTCTTC 491054 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 ||| ||||||||| ||| |||| || ||||||| ||| | |||||| ||||||| Sbjct 491053 TTTGCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 490994 Query 245128 GTAGA 245132 ||||| Sbjct 490993 GTAGA 490989 >seq113 Length=2896879 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 22462 GGTGAGAGAGTGGTCGCCTTTGCTGCAGTAGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 22521 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| |||||||| Sbjct 22522 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAACGAACTT 22581 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 22582 ATTAGCAGAGATGAGG 22597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311330189360