Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq314 95.1 1e-14 >seq314 Length=901204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 95105 CCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCT 95164 |||||||||| || |||||||| || |||||||| |||||||||||||| |||| |||| Sbjct 497276 CCCCCATGCCAACAGCCTCCACTGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCT 497335 Query 95165 TCACCTCCAACGTGTACAACAGGC-GGGTGCTCGCCGGGGAATTCC 95209 |||| |||| | ||| ||| || |||| ||| | ||||| |||| Sbjct 497336 ACACCAGCAACATCTAC-ACACGCAGGGTCCTCTCAGGGGAGTTCC 497380 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 94096 TCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAG 94155 |||||||| |||||||| |||||| |||| | ||||||| | || ||||||||||||||| Sbjct 489959 TCCAACGGGCTCGTCCCCATGCTCAGGGTGTACAACAACACCGCCCGCTACGTGGACCAG 490018 Query 94156 GGTGG 94160 ||||| Sbjct 490019 GGTGG 490023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708599481560