Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq123 84.2 2e-11 >seq123 Length=2692603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 |||||| |||| ||||| | ||| ||| | || |||||||||||||| || ||| Sbjct 202067 CAGAACGACATCTACGAGTGGAGCCGCGACCACCGCGTGCACCACAAGTACTCGGAGACG 202008 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || ||||| ||||||||| | |||| |||| ||||| ||| | || |||||| | Sbjct 202007 GACGCGGACCCGCACAACGCCCGCCGGGGCTTCTTCTTCTCCCACATCGGCTGGCTCTTC 201948 Query 108568 ATGACCAAGGACCCCGACGTGATC 108591 || |||| ||| |||||| ||| Sbjct 201947 GTGCGCAAGCACCGCGACGTCATC 201924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381761814606984