Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq78 127 2e-24 seq240 104 2e-17 seq314 100 3e-16 >seq78 Length=3980192 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || || ||||| || || ||||| ||| || ||||| | Sbjct 3095692 CGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 3095633 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || ||||| || ||||||||| Sbjct 3095632 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTG 3095573 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||||||||| | ||| | Sbjct 3095572 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCCAGGGTGATG 3095513 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || |||||||||||||| Sbjct 3095512 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 3095478 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || || |||||| | ||||| ||| || ||||| || ||| Sbjct 3095097 GTGGATTCTTTCTGGATGTTATAATCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 3095038 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | ||||||||| ||||| ||||||||||| ||| ||| || |||| Sbjct 3095037 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCCTCCTTATCCTGGATCTTGGCCTTG 3094978 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 3094977 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 3094918 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 3094917 TTCACAAAGATCTGCATG 3094900 >seq240 Length=1350550 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || || || ||| || |||||||| ||| Sbjct 1128574 GTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGTTTGCCA 1128515 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || |||||||||||||| ||| || |||| Sbjct 1128514 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTG 1128455 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||||||| | || | || ||||| ||||| || Sbjct 1128454 ACATTCTCAATGGTGTCACTGGGCTCGACTTCCAGAGTGATGGTCTTGCCAGTCAGCGTC 1128395 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1128394 TTGACAAAGATCTGCAT 1128378 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || ||||| || || ||||| || || || || | Sbjct 1128364 CGCAGCACGAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 1128305 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || ||||| || ||||||||| Sbjct 1128304 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCCTCCTTG 1128245 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 1128244 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATG 1128185 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 1128184 GTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 1128150 >seq314 Length=901204 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||| |||||| | || | ||| ||||||| ||| |||||||||||||||||| |||| Sbjct 492530 CTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 492471 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| |||||||||||||||||| || || Sbjct 492470 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 492411 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 492410 AGTCTCGGTCTGGGACTCGATGATG 492386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475486766782640