Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq240 86.0 6e-12 seq314 82.4 7e-11 >seq240 Length=1350550 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | || ||| | ||||| || ||||| || ||||| || || ||| Sbjct 1128151 ATTCCACCGCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 1128092 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | |||| | |||||||| || Sbjct 1128091 GACAGGGTACGGCCATCTTCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGG 1128032 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || || |||| || | |||||| | |||| Sbjct 1128031 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCG 1127972 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || || || || ||||| Sbjct 1127971 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 1127922 >seq314 Length=901204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || || || || |||||||||||||| ||| ||||||||||||| | ||| ||| Sbjct 492404 CGAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCA 492463 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || || || || || || ||| |||| || | ||||||| Sbjct 492464 GAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACCGAGATCGTGGAATACA 492516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451989860255560