Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq184 163 4e-35 seq115 116 5e-21 >seq184 Length=1874329 Score = 163 bits (180), Expect = 4e-35 Identities = 216/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || ||||| ||| | || || | Sbjct 273664 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 273723 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || || ||||||||||| ||||||||| | |||| Sbjct 273724 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 273783 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| | || |||| ||||| |||| ||| ||||| ||||| | ||| | ||| Sbjct 273784 AGCAGATGGCATTGCCCATCAGCCCCTTCAGGGAGAACGGCGCCCCGATCTCCACCATGG 273843 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 273844 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 273903 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 273904 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTGCAA 273963 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | ||||||||| |||| || ||||| | | | ||||| Sbjct 275600 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCGTCCCAGTCAGGGTGCTGGCGCTTGAGC 275659 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | || ||| Sbjct 275660 ACGTCGCAGACGCGGTTGTGCTCACGCAGCCAGATCGTGGCGTACATCATCAGCCCTGGC 275719 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | || |||| | || ||||| | ||| | Sbjct 275720 ACCAGCCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCAGGCACATGGGGTGGG 275779 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || ||||| | | Sbjct 275780 TACAGCATCTCTGCCTGCGTGTCCCGCACTGTCGGCGGGTACATTTCTCCATCAATCATC 275839 Query 9967 TG 9968 || Sbjct 275840 TG 275841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| || | | | |||| | |||| || | || Sbjct 274465 GATGGAGTTGTTGTAGAGGAACTGCTGGAAGGTGTACTCCTGGTCGTGGATTTGGAAGGT 274524 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| || | |||||| |||| ||||| ||||||||||| || || |||||||| Sbjct 274525 GTCGGGCAGCAATGGGTGCCAGTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTG 274584 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| || ||| ||| || | ||| |||||||| | |||| |||||||||| Sbjct 274585 GTACTGGAACCTCTGGT--TGAAGAGCAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTAC 274642 Query 9670 CCGCTGAGTTGCTGGACATA 9689 || || || ||||| ||||| Sbjct 274643 CCACTCAGGTGCTGCACATA 274662 >seq115 Length=2854308 Score = 116 bits (128), Expect = 5e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | || ||| | Sbjct 1602725 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTCCAGGGATGCTG 1602784 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || |||| || || || ||||||||||||||| | |||| Sbjct 1602785 TCTTAACAATCTCAAAGCCAGTTGCCCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1602844 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| || | | ||||| |||| |||||| ||||| || | ||| | |||| Sbjct 1602845 AGCAGATGGGATTGCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1602904 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| || ||| | ||||| |||| | ||||| | ||| | || | Sbjct 1602905 TTTCTCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 1602964 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| || | ||| ||||| || | |||| ||| || || |||| | ||| ||| || Sbjct 1602965 GAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTCTTCCTCTCCTGCA 1603023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723706640977400