Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq240 154 1e-32 seq78 140 3e-28 seq16 100 3e-16 seq113 93.3 4e-14 >seq240 Length=1350550 Score = 154 bits (170), Expect = 1e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||||||| || ||||| || || || |||||||| ||||||||| | || |||||| Sbjct 1127917 AAAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGC 1127976 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 ||| |||| | | | | | || | || |||| ||||| || || |||||| | | Sbjct 1127977 CCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAG 1128036 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| |||| ||| ||||| ||| |||| || | || ||||| ||||| Sbjct 1128037 ACCAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACT 1128096 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| || ||| | || ||||| ||||||||||| Sbjct 1128097 ACAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCG 1128136 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || |||||||| ||||||||| | || || ||| ||| Sbjct 1128149 AATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGCCCAG 1128208 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| |||||||| || | ||||| Sbjct 1128209 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 1128268 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | || ||||| |||||||| Sbjct 1128269 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTGTCTGACTACAA 1128328 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || |||||| | |||||||| Sbjct 1128329 CATCCAGAAAGAATCCACCCTGCATCTCGTGCTGCG 1128364 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| || ||||| |||||||| | || |||||| ||| Sbjct 1128378 ATGCAGATCTTTGTCAAGACGCTGACTGGCAAGACCATCACTCTGGAAGTCGAGCCCAGT 1128437 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 1128438 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAG 1128497 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || |||||||||||||| || | || ||||| ||||||||| Sbjct 1128498 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAGGATGGCCGTACCCTGTCTGACTACAAC 1128557 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| ||||| | || ||||| Sbjct 1128558 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTGCG 1128592 >seq78 Length=3980192 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 3095478 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTCGAGCCCAGT 3095537 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||| || | ||||| Sbjct 3095538 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGACCA 3095596 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 3095597 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 3095656 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||| | || ||||| |||||||||| | || || ||| Sbjct 3095657 CATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGGGGTGGC 3095705 >seq16 Length=7092959 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || ||||||||||| |||||||| ||| ||||| Sbjct 6189067 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATGTCGTG 6189126 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 6189127 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 6189181 >seq113 Length=2896879 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||||||| ||||||||| || ||||| ||||| | || | Sbjct 22597 CCTCATCTCTGCTAATAAGTTCGTTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 22538 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 22537 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCTACTGCAGCAAAGG 22478 Query 133037 CCACCA 133042 | |||| Sbjct 22477 CGACCA 22472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158038650240