Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq168 100 1e-15 seq115 93.3 2e-13 >seq168 Length=2055305 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||||||| | ||||| || || ||||||||||| | || || || || || Sbjct 1978884 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACA 1978943 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||| || | || || || |||||||| || || || |||||| Sbjct 1978944 AAAGATGCTGGAACTATTGCAGGGCTCAACGTCCTGCGAATTATCAACGAGCCCACAGCA 1979003 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| | || ||||| || Sbjct 1979004 GCTGCCATTGCCTATGGGCT 1979023 >seq115 Length=2854308 Score = 93.3 bits (102), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||||||||||||| Sbjct 801693 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACTTTTGCTCCT 801752 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| | ||||| || || || ||||| ||||||||||| Sbjct 801753 GAAGAAATTTCTGCAATGGTCCTGACGAAGATGAAGGAAACAGCAGA 801799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975658633900988