Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq39 286 4e-72 seq168 158 2e-33 >seq39 Length=5752045 Score = 286 bits (316), Expect = 4e-72 Identities = 1030/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| |||||||| || || Sbjct 1139273 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCAATGTCGTCCTTGCT 1139332 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | ||| || | Sbjct 1139333 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 1139392 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||||| ||||||| |||||||| ||||| | || || | || | || || || Sbjct 1139393 AGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 1139452 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || || |||||||| | Sbjct 1139453 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 1139512 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| ||||| || | | || || | | || || ||| Sbjct 1139513 TGTCATAGCCCTCTCACCCTCATACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAGT 1139571 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 1139572 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATGAGAGCAG 1139631 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || ||||| || | || Sbjct 1139632 TCATCACTCCTCCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCA 1139691 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || ||| || | || ||| | | ||| || ||||| || | || || | Sbjct 1139692 GATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCAGCTTGTACGGCAGCACCAT 1139751 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || ||||| |||||||| || | || || || ||||| || || || ||||| Sbjct 1139752 AAGCCACAGCCTCGTCGGGGTTGATGCTCTTGTTAAGCTCTTTGCCATTGAAGAAATCCT 1139811 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 || || | || || || ||||| || || || || || |||| || || || | | Sbjct 1139812 GTAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCCCCCACCAGCACAATCTCCTGGA 1139871 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || |||| || || || || |||| || Sbjct 1139872 TCTGGCCCTTGTCGAGCTTGGCATCACGCAGTGCCTTCTCCACCGGCTCCAGGGTGCCAC 1139931 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||||||||| |||||||||||||| || ||||| |||| Sbjct 1139932 GGAAGAGGTCAGCATTGAGCTCCTCAAAACGGGCACGGGTAATGGAGGTGTAGAAGTCAA 1139991 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTTC 7343 ||| || | | || ||||| |||||| | | || ||| || || | || | Sbjct 1139992 TGCCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 1140048 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||| | |||||| || || || | || | | || ||| ||| || | ||| | Sbjct 1140049 GCTTTGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACTGCTCGCTTGTTGCCAGCAATGT 1140108 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 1140109 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 1140168 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || || || || || || | || || ||||| || || | || | Sbjct 1140169 CCTCCCCACCCAAATGGGTGTCACCAGCCGTGGACTTTACCTCAAAAATCCCATCCTCGA 1140228 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || || ||||||||||| ||||| ||||| | | Sbjct 1140229 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACGTTTTTCT 1140288 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || || || || ||||| || || || || |||| Sbjct 1140289 CTCCTGCCCGGGTTCCCTTCTTGTCCAGGCCATAAGCAATAGCAGCTGCAGTGGGCTCAT 1140348 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || ||||||| || || | || || || || || || || Sbjct 1140349 TGATGATACGCATCACA-TTGAGGCCAGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGC 1140407 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| || || || || | ||| |||| | || || || ||| Sbjct 1140408 TGGGAGTCATTGAAGTATGCTGGCACTGTGATGACAGCGTTCTGCACCTTGCATCCTAGA 1140467 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 1140468 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGTACCATGGAGCTGATCTCCTCTG-GGAA 1140526 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || |||| Sbjct 1140527 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCTC 1140580 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||||| ||||| || || || |||| | |||| Sbjct 1140581 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACAGTGGGGTCATCATACTT 1140640 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| || ||||| |||||||| | ||||| |||||||||| ||| ||||| Sbjct 1140641 GCGGCCGATGAGGCGCTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTT 1140700 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 || || || |||||||| || || || || || || ||||| || || | |||| | Sbjct 1140701 TTTGGCAGCATCCCCGATGAGCCGCTCTGTA---TCGGTGAACGCCACATA-GCTGGGTG 1140756 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || |||||||| || || || || || | ||| || |||| || | Sbjct 1140757 TGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 1140816 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| |||||||| || || | || || ||||| || Sbjct 1140817 CGCAGGAATACGTGGTGCCGAGGTCGATGCCGATCGC 1140853 >seq168 Length=2055305 Score = 158 bits (174), Expect = 2e-33 Identities = 359/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || |||||||| ||||| || | || || || ||||| || || || Sbjct 1979674 GCCCCATACGCCACGGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAG 1979615 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || || || || || ||||| ||||| ||||| || |||| ||||| Sbjct 1979614 AAGTCCTGCAGCAGTTTCTGGATCTTGGGGATGCGTGTGGATCCTCCCACCAGCACGATG 1979555 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || || | ||| | ||| | || | || || || || |||| Sbjct 1979554 TCGTGGATCTGAGACTTGTCCAGCTTGGCGTCCCTCAGCGCCTTCTCCACGGGGTCCAGG 1979495 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | || ||||| || || || | ||| ||||| || ||| Sbjct 1979494 GTGCCACGGAACAGGTCGGCATTGAGCTCCTCGAAGCGAGCCCTGGTGATGGACGTGTAG 1979435 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | Sbjct 1979434 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGG 1979375 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 1979374 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 1979315 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | ||| || | | | ||| Sbjct 1979314 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAATGGTTCACCATGCGGTTGTCG 1979255 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 ||||| || ||||||| ||| || ||||| || || | ||| || || ||||| || || Sbjct 1979254 AAATCCTCCCCACCCAGGTGGGTGTCCCCTGCTGTGGATTTCACCTCGAAGATGCCATCT 1979195 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || ||||| || || || ||||||||||| || ||||| |||||| Sbjct 1979194 TCGATGGTCAGGATGGACACATCGAAGGTGCCGCCACCCAGGTCGAAGATGAGGACGTTC 1979135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114055643240