Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq168 114 1e-19 >seq168 Length=2055305 Score = 114 bits (126), Expect = 1e-19 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||||||| | ||||| ||||| ||||| |||||||| || || || || || Sbjct 1978884 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACA 1978943 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || || || || || |||||||| || || || || Sbjct 1978944 AAAGATGCTGGAACTATTGCAGGGCTCAACGTCCTGCGAATTATCAACGAGCCCACAGCA 1979003 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| ||||| || || || Sbjct 1979004 GCTGCCATTGCCTATGGGCTGGACAA 1979029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029171139671890