Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq314 132 9e-26 seq233 127 4e-24 seq148 127 4e-24 seq30 84.2 4e-11 >seq314 Length=901204 Score = 132 bits (146), Expect = 9e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 ||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 492517 GTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 492458 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 492457 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 492398 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 492397 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 492355 Score = 107 bits (118), Expect = 4e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || |||||||| ||||| | ||| | ||| ||||||||||||||| Sbjct 497382 CTGGAACTCCCCTGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 497323 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| |||||| |||||||| | | ||||| || Sbjct 497322 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAAATGAGGAGGCT 497263 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 497262 GTTCCTGACACCGT 497249 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| || || |||||||||||||| | | | Sbjct 491118 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 491059 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||||||| Sbjct 491058 TCTTCTTTGCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 490999 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 490998 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 490968 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 499551 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 499492 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | ||||||||| |||||||||||||||| ||| | || ||||| || || | | || Sbjct 499491 TTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCAGGAATCTCAGG 499432 Query 212816 GATGTTCTG 212824 ||||||||| Sbjct 499431 GATGTTCTG 499423 >seq233 Length=1451784 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||| ||||| || || || | | ||||| || || Sbjct 852890 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCGAGC 852949 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||||||||| | ||| || ||||| Sbjct 852950 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGC 853009 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | ||| |||||||||||| Sbjct 853010 TTCCTCTTGCGGCACTTGGAGGCAGCGATGCGGTTCCTCAGCCGCTTCCGTTCCGCCTTG 853069 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 853070 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 853102 >seq148 Length=2308041 Score = 127 bits (140), Expect = 4e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | || || || ||| ||||||| | | Sbjct 1548680 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCAGTGGCGGCCAGCTCTGCGTTCTGCCCC 1548739 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 1548740 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 1548799 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | |||||| || |||| ||| || || ||||| | || |||||| | Sbjct 1548800 TTGGAGGCGGCGATGCGGTTTCGCAGTCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 1548859 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 1548860 TCCGCGTCCAGCGGCGAC 1548877 >seq30 Length=6173023 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026 ||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| ||| Sbjct 4246619 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCCTCCAGGTTCTTCTCCCTC 4246678 Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||||||| |||||||||| || || || ||||||||||| Sbjct 4246679 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTGGTTCTGTC 4246722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931505308138240