Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq314 98.7 2e-15 >seq314 Length=901204 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || |||||||| || || || || || Sbjct 491131 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTC 491072 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| || ||| |||| ||| ||| |||| |||||||| ||||| Sbjct 491071 CCTGGCTCGCTGCTCTTCTTTGCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 491012 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 491011 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 490968 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| |||||| |||| || | | |||||| || || ||||||||||||||||||| Sbjct 492534 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 492475 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 492474 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 492415 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 492414 TGCCAGTCTC 492405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928817387467840