Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 244 1e-59 >seq1 Length=11828398 Score = 244 bits (270), Expect = 1e-59 Identities = 603/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| |||| || || |||| |||| || || || ||| || || ||| || | Sbjct 764537 TGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACATCAGTGTCAAACT 764596 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| || || | Sbjct 764597 TATTAGCAAATAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACTCCAAAAA 764653 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| ||||| ||||| || || |||| || ||||| | || ||||| | ||||| Sbjct 764654 CACAGACAGAACGAATGTGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTGGACACGT 764713 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || ||| | Sbjct 764714 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCAT 764773 Query 160285 ATTTGT-ACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || | | ||| || || || || | || || | ||| | || |||||| Sbjct 764774 ACTTGTCACTGGAAGAGAA-TGCGCCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 764832 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| || || || | ||| || ||||||| | ||| ||| Sbjct 764833 AGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACTTTAGTATTTTGCTG 764892 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | ||| |||| || || |||| | || ||||| || || ||||| || || Sbjct 764893 TTTTCCAGTACGTATTCTACAAAGCTTCTGCTAACTACAAAATAGGCACTGCCAGAAAAA 764952 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 | || | | ||| || | |||||| || ||||| | || | Sbjct 764953 ACTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTATGCCCGTGTTCTTTATTTTACCATCA 765012 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 765013 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 765072 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || ||| |||| ||||| | Sbjct 765073 AAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCTTGGTTGGTCTTTATA 765132 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| |||| || | |||||| | || ||||| || | || || || Sbjct 765133 GGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAACTTCTCCTGTAGAGA 765192 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 765193 TCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATACCACACTCTCT 765252 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| ||||| |||||| ||| | ||| || Sbjct 765253 AACTGGCTGGAAATAAAGACATTATCAAAACATGACACTATTCCCTTCACAG-CAGCAAA 765311 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || || | | |||| ||| || || | ||| || | ||||| || || ||||| Sbjct 765312 AAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTCTGTGGAGCATAGAT 765371 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 765372 CGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 765431 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 765432 TGGAAATTC 765440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577202164818360