Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq39 325 5e-84 seq78 159 5e-34 seq240 158 2e-33 seq168 116 5e-21 seq233 102 1e-16 seq115 91.5 2e-13 >seq39 Length=5752045 Score = 325 bits (360), Expect = 5e-84 Identities = 1008/1537 (66%), Gaps = 37/1537 (2%) Strand=Plus/Minus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || || || || Sbjct 1140793 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCGTTCACC 1140734 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || ||||| ||| ||| |||||||| | ||| Sbjct 1140733 GATACAGAGCGGCTCATCGGGGATGCTGCCAAAAACCAGGTAGCAATGAACCCCACCAAC 1140674 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || ||||| || || || ||||||| | || | || || Sbjct 1140673 ACCATCTTTGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACTGTGCAGTCG 1140614 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| ||| || || || || || ||||| | | | | Sbjct 1140613 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 1140557 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || ||||| | Sbjct 1140556 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTACT 1140498 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || || | || ||| | | || || Sbjct 1140497 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGATGCAAG-GTGCAGAACGCTGTCA 1140439 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| ||| || || || ||||| || |||||||| | | | Sbjct 1140438 TCACAGTGCCAGCATACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 1140379 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || |||||||| || || || ||||| ||||||||| Sbjct 1140378 TCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCTGCTATTGCTTAT 1140320 Query 195836 GGTCTGGACAAGAAC--AA----GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| || || | ||| ||||| || | |||||||| || || Sbjct 1140319 GGCCTGGACAAGAAGGGAACCCGGGCAGGAGAGAAAAACGTGCTCATCTTTGACCTGGGA 1140260 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || || | ||| || || || |||||| | Sbjct 1140259 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAGGATGGGATTTTTGAGGTAAAGTCC 1140200 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || || | | || ||| Sbjct 1140199 ACGGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 1140140 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || ||| |||| || | || | | Sbjct 1140139 GTG-GAAGAATTCAAGCGCAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCAGTGAG 1140081 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | || || || || ||| || || ||| || | Sbjct 1140080 GCGGCTGCGCACAGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCCTCCACG---CAGGC 1140024 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || | ||||| || ||||||||||| || | ||||||||||| Sbjct 1140023 CAGCATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACCTCCATTACCCGTGC 1139964 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 |||||||| ||| | || |||| | || | |||| || || || | | Sbjct 1139963 CCGTTTTGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 1139904 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 ||| ||||| || ||| | || ||| || | | || ||||| || ||||| || || Sbjct 1139903 ACTGCGTGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATTGTGCTGGTGGGGGGCTC 1139844 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365 ||||| || || ||||| || || |||| ||||||||| ||||| | || Sbjct 1139843 TACCCGGATCCCCAAGATCCAGAAGCTGCTACAGGATTTCTTCAATGGCAAAGAGCTTAA 1139784 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | |||||||| || || || || ||||||||||| ||||| || |||||||| Sbjct 1139783 CAAGAGCATCAACCCCGACGAGGCTGTGGCTTATGGTGCTGCCGTACAAGCTGCTAT--C 1139726 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 |||| | | ||||| | | || || || ||||| ||||| | ||||| | || | Sbjct 1139725 CTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCT 1139667 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 |||||||| | || ||||| || || || |||||| | || | | ||||| || Sbjct 1139666 GTCCCTGGGCATCGAGACAGCTGGAGGAGTGATGACTGCTCTCATCAAGCGTAACACCAC 1139607 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTC 196601 || || || || | || ||| | || || || || || || | || | || | Sbjct 1139606 CATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCC 1139548 Query 196602 ATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAA 196658 | || || ||||| | |||| ||| || ||| ||||||| | | || || | Sbjct 1139547 TGGTCCAGGTGTATGAGGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCA 1139491 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 || || | || || || || | |||||||| || || || ||||| | || | Sbjct 1139490 AGTTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTT 1139431 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 | || || || || ||||| || || || |||| |||| ||||||| | || || Sbjct 1139430 TTGACATCGATGCCAATGGTATCCTGAATGTCAGTGCTGTGGACAAGAGCACGGGTAAGG 1139371 Query 196779 CTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 | ||||| || |||||||||||||| || || ||||| || ||||| |||| Sbjct 1139370 AGAACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATTGACCGTA 1139311 Query 196839 TGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||| ||||| || || ||||||| | ||| || || Sbjct 1139310 TGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 1139274 >seq78 Length=3980192 Score = 159 bits (176), Expect = 5e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||| ||| | Sbjct 3094901 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 3094960 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || |||||||| |||||||| || |||||| Sbjct 3094961 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCTCCAGATCAG 3095020 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || || ||| | ||||| ||| Sbjct 3095021 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGATTATAAC 3095080 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 | || || || || || || || Sbjct 3095081 ATCCAGAAAGAATCCACCCTGCA 3095103 >seq240 Length=1350550 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| ||||| ||| | Sbjct 1127922 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 1127981 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| ||||| |||||||||||||| || || ||| Sbjct 1127982 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 1128041 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || ||||| ||||| || ||| | |||||||| |||||||| | || |||||| Sbjct 1128042 CAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGTACCCTGTCCGACTACAAC 1128101 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || ||||| ||| | || || | || || ||||| Sbjct 1128102 ATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGCGGTGG 1128148 >seq168 Length=2055305 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| ||| || || || ||||| ||||| || | Sbjct 1978891 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGCCAGGCCACAAAAGATG 1978950 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| ||||||| || || ||| || |||||||||| || || ||||| ||||| | Sbjct 1978951 CTGGAACTATTGCAGGGCTCAACGTCCTGCGAATTATCAACGAGCCCACAGCAGCTGCCA 1979010 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||| ||||||||||| Sbjct 1979011 TTGCCTATGGGCTGGACAAGAA 1979032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| | || || ||| | || || || || || ||||||||||| | ||| ||| Sbjct 1977927 AGCTGTCGGGATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTGTTCCAACATGGGAA 1977986 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || ||||| || | |||||||| || ||||| || || || ||||| ||||| || Sbjct 1977987 GGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACACCGAGCTACGTGGCCTTCAC 1978046 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||| | || | ||| | || ||||| || || || ||| || |||||||| | ||| Sbjct 1978047 AGACACAGAGAGGCTCATCGGTGATGCTGCCAAGAACCAGGTGGCCATGAACCCAACCAA 1978106 Query 195478 TACTGTCTT 195486 || ||||| Sbjct 1978107 CACAGTCTT 1978115 >seq233 Length=1451784 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||||||||| || || ||||| |||||||||||||| ||| | Sbjct 988691 ATGCAGATCTTCGTGAAAACCCTGACGGGCAAAACCATCACCCTCGAGGTGGAGCCCAAT 988750 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| ||| | ||||||||||| || || |||||||| Sbjct 988751 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGG 988794 >seq115 Length=2854308 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| | || | ||| || || | | Sbjct 802289 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 802345 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | ||||| || || || || || |||||||| || || |||| ||||| || | Sbjct 802346 TGTATTTGACCTGGGCGGCGGAACTTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 802405 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||| ||||| || ||||| ||||| || || Sbjct 802406 CTTTGAAGTTGTGGCTACTAATGGTGACACTCACCTGGGTGGAGAAGACTTTGA 802459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657842984835920