Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sturnus_20vulgaris_20[refseq_20GCF_5F001447265.1_202015-11-20] 2,361 sequences; 1,036,755,994 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq404 215 8e-50 seq21 192 9e-43 seq490 109 9e-18 seq314 105 1e-16 seq16 100 5e-15 seq204 86.0 1e-10 >seq404 Length=396228 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 172452 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 172511 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 172512 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 172571 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 172572 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 172631 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 172632 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 172691 Query 1485710 AAAC 1485713 | || Sbjct 172692 ACAC 172695 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 250043 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 249984 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 249983 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 249924 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 249923 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 249864 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 249863 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 249804 Query 1485710 AAAC 1485713 | || Sbjct 249803 ACAC 249800 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 260090 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 260149 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 260150 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 260209 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 260210 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 260269 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 260270 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 260329 Query 1485710 AAAC 1485713 | || Sbjct 260330 ACAC 260333 Score = 215 bits (238), Expect = 8e-50 Identities = 194/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 264209 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 264150 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 264149 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 264090 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 264089 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 264030 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 264029 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 263970 Query 1485710 AAAC 1485713 | || Sbjct 263969 ATAC 263966 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 226144 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 226203 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 226204 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 226263 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| ||||||||||| || || |||| Sbjct 226264 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAAGAATTCA 226323 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 226324 TGATACCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 226383 Query 1485710 AAAC 1485713 | || Sbjct 226384 ACAC 226387 Score = 95.1 bits (104), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 163710 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 163769 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | ||| |||||||| ||||| Sbjct 163770 GCAGCAGCCGCACGGCCGTCTG 163791 >seq21 Length=6853635 Score = 192 bits (212), Expect = 9e-43 Identities = 196/256 (77%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||| |||||| ||||||| || || | | Sbjct 3223959 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACCGCGTGCTTGGCCAGCTCTCCTGGGA 3223900 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| ||| |||||||| | Sbjct 3223899 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGATGTGATGGTGGAACGCTTGTTGTAGT 3223840 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || | ||||| || | ||||||||||| || ||||||| Sbjct 3223839 GGGCCAGGCGGGAGGCTTCTCCAGCAATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 3223780 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| || || |||||||| |||||||||| Sbjct 3223779 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGATGGACCTGCTTCAGCACCTTGT 3223720 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 3223719 AGACATAGATGGAGTA 3223704 >seq490 Length=243748 Score = 109 bits (120), Expect = 9e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||||||| | |||||||| | | |||| | Sbjct 93694 CCCGAGAGCCGCGGCTTCGTGGAGAACTCGTACCTGGCCGGCCTCACCCCCACCGAGTTC 93635 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || |||||||||||||| ||| |||||||||||||||| ||||||||| Sbjct 93634 TTCTTCCACGCCATGGGCGGGCGCGAGGGGCTCATCGACACGGCCGTCAAAACGGCCGAG 93575 Query 431142 ACGGG 431146 || || Sbjct 93574 ACCGG 93570 >seq314 Length=901204 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 492508 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 492449 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || |||||| |||| | | || | Sbjct 492448 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 492389 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 492388 ATGGCGTACCA 492378 Score = 93.3 bits (102), Expect = 7e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 2073652 GCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAG 2073711 |||| ||||||||| || || | ||||||||||| || |||| ||||| || |||||| Sbjct 489531 GCAAGGCCGATGCCCCCCGCAGATTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAG 489472 Query 2073712 ATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||||||| |||| |||||||| || ||| ||||| Sbjct 489471 ATGCCCTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 489431 >seq16 Length=7092959 Score = 100 bits (110), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| |||||||||||||| || |||||||||| ||| || ||| Sbjct 6189068 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATGTCGTGG 6189127 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || ||||||||||| Sbjct 6189128 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 6189180 >seq204 Length=1689417 Score = 86.0 bits (94), Expect = 1e-10 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 |||||||||| |||| || |||||| ||| ||||| || || || ||| || | Sbjct 833637 GCTGGTAATCAGTGCCCCGGACAAATCTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCA 833696 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||| |||||| | |||||| ||||| || |||| | || ||||| || | Sbjct 833697 GCATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAG 833756 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 || ||||| |||| ||||| | ||||||||||||||| ||||| Sbjct 833757 CTTTCATGTTGTCCAGGTAAGCGTGGAGGTCGGCAAAGAGGATTGTCACC 833806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915995249661479